[Treebase-guts] SF.net SVN: treebase:[894] trunk/treebase-core/src/test/java/org/cipres/ treebase/domain/nexus/NexmlMatrixConverterTest.java

[<lol...@us...>]

Revision: 894
          http://treebase.svn.sourceforge.net/treebase/?rev=894&view=rev
Author:   loloyohe
Date:     2011-06-01 18:47:29 +0000 (Wed, 01 Jun 2011)

Log Message:
-----------
Test for NexmlMatrixConverter class for function fromTreeBaseToXml(CharacterMatrix). This is the function that calls the poplulateXmlMatrix() function

Added Paths:
-----------
    trunk/treebase-core/src/test/java/org/cipres/treebase/domain/nexus/NexmlMatrixConverterTest.java

Added: trunk/treebase-core/src/test/java/org/cipres/treebase/domain/nexus/NexmlMatrixConverterTest.java
===================================================================
--- trunk/treebase-core/src/test/java/org/cipres/treebase/domain/nexus/NexmlMatrixConverterTest.java	                        (rev 0)
+++ trunk/treebase-core/src/test/java/org/cipres/treebase/domain/nexus/NexmlMatrixConverterTest.java	2011-06-01 18:47:29 UTC (rev 894)
@@ -0,0 +1,64 @@
+package org.cipres.treebase.domain.nexus;
+
+import junit.framework.Assert;
+
+import org.cipres.treebase.dao.AbstractDAOTest;
+import org.cipres.treebase.domain.matrix.CharacterMatrix;
+import org.cipres.treebase.domain.nexus.nexml.NexmlMatrixConverter;
+import org.cipres.treebase.domain.nexus.NexusDataSet;
+import org.cipres.treebase.domain.study.Study;
+import org.cipres.treebase.domain.taxon.TaxonLabelHome;
+import org.nexml.model.DocumentFactory;
+import org.nexml.model.Document;
+
+public class NexmlMatrixConverterTest extends AbstractDAOTest {
+	private TaxonLabelHome mTaxonLabelHome;
+
+	/**
+	 * Test  for {@link org.cipres.treebase.domain.nexus.nexml.NexmlMatrixConverter#fromTreeBaseToXml(CharacterMatrix)}.
+	 */
+	public void testNexmlMatrixConverter() {
+		String testName = "testNexmlMatrixConverter";
+		//signal beginning of test
+		if (logger.isInfoEnabled()) {
+			logger.info("\n\t\tRunning Test: " + testName);
+		}
+		
+		long studyId = 1787;
+		Study study = (Study)loadObject(Study.class, studyId);
+		NexusDataSet nexusDataSet = new NexusDataSet();
+		
+		Document doc = DocumentFactory.safeCreateDocument();
+		nexusDataSet.setNexmlProject(doc);
+		NexmlMatrixConverter nmc = new NexmlMatrixConverter(study,getTaxonLabelHome(),doc);
+		for (org.cipres.treebase.domain.matrix.Matrix matrix : nexusDataSet.getMatrices() ) {
+			if ( matrix instanceof CharacterMatrix ) {
+				//fromTreeBaseToXml(CharacterMatrix) is main method being tested here--it uses populateXmlMatrix() function
+				String xml = ((Document) nmc.fromTreeBaseToXml((CharacterMatrix)matrix)).getXmlString();
+				System.out.println(xml);
+				Assert.assertNotNull(xml);
+			}
+		}
+		//signal that test is over
+		if (logger.isInfoEnabled()) {
+			logger.info(testName + " - end ");
+		}
+	}
+	
+	/**
+	 * Return the TaxonLabelHome field.
+	 * 
+	 * @return TaxonLabelHome mTaxonLabelHome
+	 */
+	public TaxonLabelHome getTaxonLabelHome() {
+		return mTaxonLabelHome;
+	}
+
+	/**
+	 * Set the TaxonLabelHome field.
+	 */
+	public void setTaxonLabelHome(TaxonLabelHome pNewTaxonLabelHome) {
+		mTaxonLabelHome = pNewTaxonLabelHome;
+	}	
+
+}


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