Re: [Treebase-devel] charsets?

[Laurel Y. <lol...@gm...>]

On Mon, May 23, 2011 at 7:35 AM, Rutger Vos <R....@re...> wrote:

> > For those that do, it seems only visible in the nexus format, not
> > nexml.  Can we get charset tags in nexml?
> >
> > Yes, that should be easily doable. Maybe Laurel Yohe (a new Google Summer
> of
> > Code author) can implement this as an exercise to get to know TreeBASE's
> > code.  We need a NeXML solution both for expressing CHARSET free text and
> > for expressing the row-segment metadata like the Genbank accession
> number.
>
> That should be doable, yes.
>
> First task...excellent! I'll hop to it and see what I can do.


>  > Also, for a given matrix, is the order of characters the same, if I
> > download it in nexus and nexml?  If so, I suppose it would be easy to
> > just pull out the charset info from the nexus file.
> >
> > Yes, if I understand what you're saying. Of course, the order of the
> > characters are not shuffled (!!) but I don't know why you might think
> that
> > could happen.
>
> The characters are indeed in the same order.
>
> --
> Dr. Rutger A. Vos
> School of Biological Sciences
> Philip Lyle Building, Level 4
> University of Reading
> Reading, RG6 6BX, United Kingdom
> Tel: +44 (0) 118 378 7535
> http://rutgervos.blogspot.com
>
>
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