[Treebase-devel] charsets?

[Richard R. <rr...@fi...>]

I'm trying to decompose sequence alignments from TB into component
gene regions.  Does TB have a policy regarding uploaded matrices
providing this information?  E.g. S11152 does not - 8 cpDNA regions
are concatenated without any charset or partition info.

For those that do, it seems only visible in the nexus format, not
nexml.  Can we get charset tags in nexml?

Also, for a given matrix, is the order of characters the same, if I
download it in nexus and nexml?  If so, I suppose it would be easy to
just pull out the charset info from the nexus file.

Thanks
-Rick