[Treebase-guts] SF.net SVN: treebase:[872] trunk/treebase-core/src/main/java/org/cipres/ treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java

[<rv...@us...>]

Revision: 872
          http://treebase.svn.sourceforge.net/treebase/?rev=872&view=rev
Author:   rvos
Date:     2011-05-19 12:57:49 +0000 (Thu, 19 May 2011)

Log Message:
-----------
In rooted trees the root attribute needs to be set on the node it applies to. Omitting the attribute caused jsPhyloSVG to complain.

Modified Paths:
--------------
    trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java

Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java	2011-05-17 21:03:38 UTC (rev 871)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java	2011-05-19 12:57:49 UTC (rev 872)
@@ -3,7 +3,6 @@
 import java.util.Iterator;
 import java.util.Set;
 
-import org.cipres.treebase.Constants;
 import org.cipres.treebase.domain.study.Study;
 import org.cipres.treebase.domain.taxon.TaxonLabel;
 import org.cipres.treebase.domain.taxon.TaxonLabelHome;
@@ -130,6 +129,9 @@
 		if ( null != tbNode.getName() ) {
 			xmlNode.setLabel(tbNode.getName());
 		}
+		if ( tbNode.isRootNode() ) {
+			xmlNode.setRoot(true);
+		}
 		attachTreeBaseID(xmlNode, tbNode,PhyloTreeNode.class);	
 		TaxonLabel taxonLabel = tbNode.getTaxonLabel();
 		if ( null != taxonLabel ) {


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