[Treebase-guts] SF.net SVN: treebase:[791] trunk/treebase-core/src/main/java/org/cipres/ treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java

[<rv...@us...>]

Revision: 791
          http://treebase.svn.sourceforge.net/treebase/?rev=791&view=rev
Author:   rvos
Date:     2011-04-19 11:19:03 +0000 (Tue, 19 Apr 2011)

Log Message:
-----------
Now setting the xml:base attribute to <phylowsPurl>/tree/TB2: on every tree block, and using the TreeBaseIDString as the xml id on every node.

Modified Paths:
--------------
    trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java

Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java	2011-04-19 11:17:37 UTC (rev 790)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlTreeBlockConverter.java	2011-04-19 11:19:03 UTC (rev 791)
@@ -99,6 +99,7 @@
 		TaxonLabelSet taxonLabelSet = treeBlock.getTaxonLabelSet();
 		OTUs xmlOTUs = getOTUsById(taxonLabelSet.getId());
 		org.nexml.model.TreeBlock xmlTreeBlock = getDocument().createTreeBlock(xmlOTUs);
+		xmlTreeBlock.setBaseURI(mTreeBaseURI);
 		if ( null != treeBlock.getTitle() ) {
 			xmlTreeBlock.setLabel(treeBlock.getTitle());
 		}
@@ -143,6 +144,7 @@
 		}
 		for ( PhyloTreeNode tbChildNode : tbNode.getChildNodes() ) {
 			Node xmlChildNode = xmlTree.createNode();
+			xmlChildNode.setId(tbChildNode.getTreebaseIDString().toString());
 			FloatEdge xmlEdge = xmlTree.createEdge(xmlNode, xmlChildNode);
 			if ( null != tbChildNode.getBranchLength() ) {
 				xmlEdge.setLength(tbChildNode.getBranchLength());


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