[Treebase-guts] SF.net SVN: treebase:[787] trunk/treebase-core/src/main/java/org/cipres/ treebase/domain/nexus/nexml/NexmlOTUConverter.java

[<rv...@us...>]

Revision: 787
          http://treebase.svn.sourceforge.net/treebase/?rev=787&view=rev
Author:   rvos
Date:     2011-04-19 10:59:49 +0000 (Tue, 19 Apr 2011)

Log Message:
-----------
Now setting the xml:base attribute to <phylowsPurl>/taxon/TB2: on every taxa block.

Modified Paths:
--------------
    trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlOTUConverter.java

Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlOTUConverter.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlOTUConverter.java	2011-04-19 10:55:10 UTC (rev 786)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/domain/nexus/nexml/NexmlOTUConverter.java	2011-04-19 10:59:49 UTC (rev 787)
@@ -1,5 +1,7 @@
 package org.cipres.treebase.domain.nexus.nexml;
 
+import java.net.URI;
+
 import org.cipres.treebase.domain.study.Study;
 import org.cipres.treebase.domain.taxon.TaxonLabel;
 import org.cipres.treebase.domain.taxon.TaxonLabelHome;
@@ -46,6 +48,7 @@
 	 */
 	public OTUs fromTreeBaseToXml(TaxonLabelSet taxonLabelSet) {
 		OTUs xmlOTUs = getDocument().createOTUs();
+		xmlOTUs.setBaseURI(mTaxonBaseURI);
 		xmlOTUs.setLabel(taxonLabelSet.getTitle());
 		attachTreeBaseID(xmlOTUs,taxonLabelSet,TaxonLabelSet.class);
 		for ( TaxonLabel taxonLabel : taxonLabelSet.getTaxonLabelsReadOnly() ) {


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