Re: [Treebase-devel] viz problem with trees for S11267

[William P. <wil...@ya...>]

On Apr 14, 2011, at 9:39 AM, Richard Ree wrote:

> how would I go about harvesting the GenBank numbers for a given study

For getting a list of all taxa in a study, you could do this:

http://purl.org/phylo/treebase/phylows/study/find?query=tb.identifier.study=S10145&format=rss1&recordSchema=taxon

The ids for uBio and NCBI are listed where available. 

bp

  <item rdf:about="http://purl.org/phylo/treebase/phylows/taxon/TB2:Tx238856">
    <title><![CDATA[Ruta montana]]></title>
    <link>http://purl.org/phylo/treebase/phylows/taxon/TB2:Tx238856</link>
    <description><![CDATA[]]></description>
		<owl:sameAs 
			xmlns:owl="http://www.w3.org/2002/07/owl#">http://purl.org/phylo/treebase/phylows/taxon/TB2:Tx238856</owl:sameAs>
	
		<skos:exactMatch 
			xmlns:skos="http://www.w3.org/2004/02/skos/core#">http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=266085</skos:exactMatch>
	
		<tb:identifier.ncbi 
			xmlns:tb="http://treebase.org/terms#">266085</tb:identifier.ncbi>
	
		<skos:exactMatch 
			xmlns:skos="http://www.w3.org/2004/02/skos/core#">http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:5942549</skos:exactMatch>
	
		<tb:identifier.ubio 
			xmlns:tb="http://treebase.org/terms#">5942549</tb:identifier.ubio>
	
		<tb:identifier.taxon.tb1 
			xmlns:tb="http://treebase.org/terms#">238856</tb:identifier.taxon.tb1>
  </item>