Re: [Treebase-devel] [Nexml-discuss] iEvoBio registration is open. Data integration challenge!

[Hilmar L. <hl...@ne...>]

Great suggestion indeed. Also a good example for data integration with  
the purpose of discovering something you hadn't known before, which  
personally I think is what's going to be to compel the audience.  
Though obviously I don't know how the submissions are going to turn out.

Great to see though that this is sparking ideas and discussion even  
before the website's official existence :)

	-hilmar

On Jan 20, 2011, at 4:12 PM, Arlin Stoltzfus wrote:

> start with user-input gene (protein) tree, get taxids for species
> sources of genes, use species list to extract species tree from ToL,
> run a reconcile-tree algorithm, display the reconcile-tree with
> duplications, add GO annotations and colorize them to reveal
> functional shifts in paralogous subfamilies.
>
> if the starting tree is from treebase, the first two steps are done
> already (in many cases).
>
> but  that's a heavy load.
>
> arlin
>
> On Jan 20, 2011, at 3:56 PM, Rutger Vos wrote:
>
>> Mmmm... yeah, I guess it would make more sense for the message to  
>> come
>> out of @ievobio rather than being picked up by someone in the
>> twittersphere stumbling across the registration page. That said, it
>> would be interesting to think about how some projects near and dear  
>> to
>> our hearts might be parts in a data integration challenge. For
>> example: traverse the ToL (with a new visualizer, e.g. jsPhyloSVG)
>> that can attach clickable PhyloWS query URLs to nodes in the ToL  
>> which
>> lead you to any trees in TreeBASE for that (higher or terminal)  
>> taxon.
>>
>> On Thu, Jan 20, 2011 at 1:40 PM, Hilmar Lapp <hl...@ne...>
>> wrote:
>>> Registration isn't quite open yet - we depend on Evolution for
>>> that, which
>>> needs a few days more. We won't be silent about it either when that
>>> happens
>>> :-)
>>>
>>>       -hilmar
>>>
>>> On Jan 20, 2011, at 3:56 AM, Rutger Vos wrote:
>>>
>>>> http://ievobio.org/challenge.html
>>>>
>>>> --
>>>> Dr. Rutger A. Vos
>>>> School of Biological Sciences
>>>> Philip Lyle Building, Level 4
>>>> University of Reading
>>>> Reading
>>>> RG6 6BX
>>>> United Kingdom
>>>> Tel: +44 (0) 118 378 7535
>>>> http://www.nexml.org
>>>> http://rutgervos.blogspot.com
>>>>
>>>>
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>>>
>>> --
>>> ===========================================================
>>> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
>>> ===========================================================
>>>
>>>
>>>
>>>
>>
>>
>>
>> -- 
>> Dr. Rutger A. Vos
>> School of Biological Sciences
>> Philip Lyle Building, Level 4
>> University of Reading
>> Reading
>> RG6 6BX
>> United Kingdom
>> Tel: +44 (0) 118 378 7535
>> http://www.nexml.org
>> http://rutgervos.blogspot.com
>>
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>> Nex...@li...
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>
> -------
> Arlin Stoltzfus (ar...@um...)
> Fellow, IBBR; Adj. Assoc. Prof., UMCP; Research Biologist, NIST
> IBBR, 9600 Gudelsky Drive, Rockville, MD
> tel: 240 314 6208; web: www.molevol.org
>
>
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> Learn about various malware tactics and how to avoid them. Understand
> malware threats, the impact they can have on your business, and how  
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> can protect your company and customers by using code signing.
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> Tre...@li...
> https://lists.sourceforge.net/lists/listinfo/treebase-devel

-- 
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: Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
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