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Re: [Treebase-devel] [Nexml-discuss] iEvoBio registration is open. Data integration challenge!
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From: Rutger V. <rut...@gm...> - 2011-01-20 21:16:28
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On Thu, Jan 20, 2011 at 9:12 PM, Arlin Stoltzfus <ar...@um...> wrote: > start with user-input gene (protein) tree, get taxids for species > sources of genes, use species list to extract species tree from ToL, > run a reconcile-tree algorithm, display the reconcile-tree with > duplications, add GO annotations and colorize them to reveal > functional shifts in paralogous subfamilies. > > if the starting tree is from treebase, the first two steps are done > already (in many cases). > > but that's a heavy load. Very useful, though. -- Dr. Rutger A. Vos School of Biological Sciences Philip Lyle Building, Level 4 University of Reading Reading RG6 6BX United Kingdom Tel: +44 (0) 118 378 7535 http://www.nexml.org http://rutgervos.blogspot.com |
