[Treebase-guts] [ treebase-Bugs-3089438 ] Find journal name in Dryad bagit metadata

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Bugs item #3089438, was opened at 2010-10-17 21:04
Message generated for change (Comment added) made by vgapeyev
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Category: APIs
Group: None
>Status: Closed
Priority: 7
Private: No
Submitted By: Kevin S. Clarke (ksclarke)
Assigned to: Vladimir Gapeyev (vgapeyev)
Summary: Find journal name in Dryad bagit metadata

Initial Comment:
Dryad returns to TreeBASE information about a submission in the bagit format.  This format contains a data/dryadpub.xml record that contains a metadata element with journal information.  The element is <bibo:Journal>  Bill Piel has mentioned that the TreeBASE side is not finding the journal information.  TreeBASE code needs to be updated to look in the data/dryadpub.xml record (after unpacking the bagit format) for this information.

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>Comment By: Vladimir Gapeyev (vgapeyev)
Date: 2010-11-18 15:28

Message:
The data extraction code on the Treebase side was not aware of the
bibo=http://purl.org/ontology/bibo/ namespace. 
Instead, it was expecting
prism=http://prismstandard.org/namespaces/basic/2.0/

Moreover, it appears (at least on demo.dryad.org) that dryadpub.xml is not
yet fully implemented: 
  - <dc:creator> is duplicated in my submissions
  - <bibo:volume/> is empty, even though I have supplied one
  - none of these fields from the submission page propagated into XML:
DOI, journal number and year, keywords. 

As of SVN 761, I have fixed the immediate problem at hand (propagation of
the Journal name), as well as guessed (from the bibo spec and current usage
in dryadpub.xml) how the missing fields would be implemented and added code
to read them (untested). 


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Comment By: Vladimir Gapeyev (vgapeyev)
Date: 2010-11-18 15:28

Message:
Your bug has been resolved.  Thanks for the report.


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Comment By: Vladimir Gapeyev (vgapeyev)
Date: 2010-10-20 14:17

Message:
See
https://www.nescent.org/wg_dryad/TreeBASE_Submission_Integration#Progress_with_Handshaking_.28as_of_7-22-10.29
for how bagit submission works

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