Re: [Treebase-devel] phylowidget issue

[Rutger V. <rut...@gm...>]

To me, tree-editing seems like an odd requirement anyway. It would be
much better for all involved if all editing is done inside client-side
mesquite.

On Mon, Nov 1, 2010 at 2:20 PM, Hilmar Lapp <hl...@ne...> wrote:
> Yeah - I thought editing is a requirement. If it's not switching to the more
> lightweight jsPhyloSVG seems favorable to me too.
>
>        -hilmar
>
> On Nov 1, 2010, at 9:52 AM, Rutger Vos wrote:
>
>> Did you hear that jsPhyloSVG now supports NeXML? I think it's an
>> alternative to PhyloWidget that is worth considering, though there are
>> also downsides - primarily that it doesn't allow editing of trees.
>>
>> On Mon, Nov 1, 2010 at 3:13 AM, Hilmar Lapp <hl...@ne...> wrote:
>>>
>>> On Oct 29, 2010, at 11:28 AM, William Piel wrote:
>>>
>>> Why would this be the case for some trees but not others? I'm guessing
>>> that
>>> instead of writing the newick on the fly, TreeBASE is just grabbing the
>>> newick string from a stored version (table: phylotree field:
>>> newickstring),
>>> and for some reason the stored version is missing a semicolon (could be
>>> that
>>> the authors rerooted the trees using our reroot tool, and our reroot tool
>>> has a bug wherein it doesn't return a string with a semicolon -- hence
>>> why
>>> we don't see this problem with all trees).
>>>
>>> Is that bug in the tracker? Is it difficult to fix? I.e., is this more
>>> complicated than finding the property setter and changing it so that it
>>> makes sure that there is always a semicolon at the end?
>>> -hilmar
>>> --
>>> ===========================================================
>>> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
>>> ===========================================================
>>>
>>>
>>>
>>>
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>>
>>
>>
>> --
>> Dr. Rutger A. Vos
>> School of Biological Sciences
>> Philip Lyle Building, Level 4
>> University of Reading
>> Reading
>> RG6 6BX
>> United Kingdom
>> Tel: +44 (0) 118 378 7535
>> http://www.nexml.org
>> http://rutgervos.blogspot.com
>
> --
> ===========================================================
> : Hilmar Lapp  -:- Durham, NC -:- informatics.nescent.org :
> ===========================================================
>
>
>
>



-- 
Dr. Rutger A. Vos
School of Biological Sciences
Philip Lyle Building, Level 4
University of Reading
Reading
RG6 6BX
United Kingdom
Tel: +44 (0) 118 378 7535
http://www.nexml.org
http://rutgervos.blogspot.com