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Re: [Treebase-devel] Production view trees broken
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From: Jon A. <jon...@du...> - 2010-07-01 18:19:00
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Bill, On production, there are all sorts of files in the treebase-web/NexusFileDownload/null folder on production. On development, there are only a couple of nexus files. Here is the directory list on production: -rw-r--r-- 1 tomcat tomcat 410015 Jun 29 14:58 Combined_no_gaps.nexusorg -rw-r--r-- 1 tomcat tomcat 50000 Jun 29 15:03 T5846.xml -rw-r--r-- 1 tomcat tomcat 1973 Jun 29 15:03 T5846.nex -rw-r--r-- 1 tomcat tomcat 127214 Jun 29 15:05 M700.xml -rw-r--r-- 1 tomcat tomcat 41597 Jun 29 15:06 M700.nex -rw-r--r-- 1 tomcat tomcat 79276 Jun 29 15:08 M137.xml -rw-r--r-- 1 tomcat tomcat 6785 Jun 29 15:10 M1607.nexorg -rw-r--r-- 1 tomcat tomcat 18714 Jun 29 15:10 M703.nex -rw-r--r-- 1 tomcat tomcat 46404 Jun 29 15:15 S598.nex -rw-r--r-- 1 tomcat tomcat 117855 Jun 29 15:26 S1070.nex -rw-r--r-- 1 tomcat tomcat 132926 Jun 29 15:29 S1925.nex -rw-r--r-- 1 tomcat tomcat 721781 Jun 29 15:32 S1070.xml -rw-r--r-- 1 tomcat tomcat 39 Jun 29 16:33 M4333.nexorg -rw-r--r-- 1 tomcat tomcat 7539 Jun 29 17:03 M4627.nex -rw-r--r-- 1 tomcat tomcat 359460 Jun 29 18:06 S279.xml -rw-r--r-- 1 tomcat tomcat 554872 Jun 29 18:07 S279.rdf -rw-r--r-- 1 tomcat tomcat 117642 Jun 29 18:07 S279.nex -rw-r--r-- 1 tomcat tomcat 414351 Jun 29 18:47 M5154.nex -rw-r--r-- 1 tomcat tomcat 418724 Jun 29 18:49 AnalysisStep5868.nex -rw-r--r-- 1 tomcat tomcat 10454 Jun 29 18:50 T7818.nex -rw-r--r-- 1 tomcat tomcat 0 Jun 29 19:58 S378.rdf -rw-r--r-- 1 tomcat tomcat 127998 Jun 29 19:58 S378.nex -rw-r--r-- 1 tomcat tomcat 41548 Jun 29 19:59 M2239.nex -rw-r--r-- 1 tomcat tomcat 378210 Jun 29 19:59 M2239.rdf -rw-r--r-- 1 tomcat tomcat 8795 Jun 29 20:01 T2406.nex -rw-r--r-- 1 tomcat tomcat 15011581 Jun 29 20:53 S378.xml -rw-r--r-- 1 tomcat tomcat 11971 Jun 29 21:47 AnalysisStep4901.nex -rw-r--r-- 1 tomcat tomcat 712186 Jun 29 22:13 AnalysisStep3753.nex -rw-r--r-- 1 tomcat tomcat 310360 Jun 30 01:05 S10156.nex -rw-r--r-- 1 tomcat tomcat 608861 Jun 30 01:52 S1787.xml -rw-r--r-- 1 tomcat tomcat 225429 Jun 30 05:10 S2199.nex -rw-r--r-- 1 tomcat tomcat 161658 Jun 30 05:14 S1450.nex -rw-r--r-- 1 tomcat tomcat 388815 Jun 30 08:20 S9941.xml -rw-r--r-- 1 tomcat tomcat 216620 Jun 30 13:33 M3054.xml -rw-r--r-- 1 tomcat tomcat 10887 Jun 30 13:35 M3676.nexorg -rw-r--r-- 1 tomcat tomcat 3842 Jun 30 14:07 T825.nex -rw-r--r-- 1 tomcat tomcat 3182838 Jun 30 14:51 S423.xml -rw-r--r-- 1 tomcat tomcat 593543 Jun 30 15:09 S10420.nex -rw-r--r-- 1 tomcat tomcat 152329 Jun 30 15:21 M4245.nex -rw-r--r-- 1 tomcat tomcat 11204 Jun 30 17:14 S9941.nex -rw-r--r-- 1 tomcat tomcat 3146 Jun 30 17:32 M3438.nexorg -rw-r--r-- 1 tomcat tomcat 5102 Jun 30 17:32 M3759.nex -rw-r--r-- 1 tomcat tomcat 10073 Jun 30 17:49 T2839.nex -rw-r--r-- 1 tomcat tomcat 255372 Jun 30 17:52 T2839.xml -rw-r--r-- 1 tomcat tomcat 5472 Jun 30 17:54 S1825A7197.treorg -rw-r--r-- 1 tomcat tomcat 406225 Jun 30 18:17 T2839.rdf -rw-r--r-- 1 tomcat tomcat 708148 Jun 30 18:27 M2000.nex -rw-r--r-- 1 tomcat tomcat 160031 Jun 30 19:21 M4828.nex -rw-r--r-- 1 tomcat tomcat 45247 Jun 30 22:51 M4260.nexorg -rw-r--r-- 1 tomcat tomcat 75408 Jul 1 07:05 M2286.nexorg -rw-r--r-- 1 tomcat tomcat 204984 Jul 1 07:06 M1476.xml -rw-r--r-- 1 tomcat tomcat 627220 Jul 1 11:16 Sundue_Islam_Ranker.nexorg -rw-r--r-- 1 tomcat tomcat 12618 Jul 1 11:27 T19939.nex -rw-r--r-- 1 tomcat tomcat 4017 Jul 1 11:34 S100.nex -rw-r--r-- 1 tomcat tomcat 46691 Jul 1 11:35 S1501.nex -rw-r--r-- 1 tomcat tomcat 39 Jul 1 12:42 M4463.nexorg -rw-r--r-- 1 tomcat tomcat 231367 Jul 1 12:43 M4193.nex -rw-r--r-- 1 tomcat tomcat 460226 Jul 1 12:57 M2570.xml -rw-r--r-- 1 tomcat tomcat 247552 Jul 1 13:00 M2780.nexorg And on development: -rw-r--r-- 1 treebasedev treebase-dev 4339 Jul 1 12:50 T2026.nex -rw-r--r-- 1 treebasedev treebase-dev 2409 Jul 1 11:53 T2032.nex -rw-r--r-- 1 treebasedev treebase-dev 3577 Jul 1 12:50 T2041.nex -rw-r--r-- 1 treebasedev treebase-dev 1347 Jul 1 11:34 T3631.nex Don't know what it means. Possibly something is hardcoded to a path that only exists on dev. Production and dev are not identical with regards to their location on the file system. -Jon On Jul 1, 2010, at 2:10 PM, William Piel wrote: > > On Jul 1, 2010, at 12:00 PM, Jon Auman wrote: > >> Any ideas what to check? >> >> -Jon > > > I don't know why the dev build would work when the production build would not... > > I'll cc this to Tre...@li... in case others have ideas. > > bp > > >> On Jul 1, 2010, at 11:42 AM, William Piel wrote: >> >>> Hi Jon, >>> >>> Something seems to be broken in the PRODUCTION build of TreeBASE, but that nonetheless works okay in the DEV build. >>> >>> For example, for viewing trees in PhyloWidget, this works fine in the dev build: >>> >>> http://www.phylowidget.org/full/?tree='http://treebase-dev.nescent.org/treebase-web/tree_for_phylowidget/TB2:Tr2026' >>> >>> ... because this URL returns a NEXUS tree file: http://treebase-dev.nescent.org/treebase-web/tree_for_phylowidget/TB2:Tr2026 >>> >>> By contrast, viewing the same tree on production fails: >>> >>> http://www.phylowidget.org/full/?tree='http://www.treebase.org/treebase-web/tree_for_phylowidget/TB2:Tr2026' >>> >>> .... because this URL returns a 404 Error: http://www.treebase.org/treebase-web/tree_for_phylowidget/TB2:Tr2026 >>> >>> Could you look into this? >>> >>> thanks, >>> >>> Bill >>> >>> >>> >> >> ------------------------------------------------------- >> Jon Auman >> Systems Administrator >> National Evolutionary Synthesis Center >> Duke University >> http:www.nescent.org >> jon...@ne... >> ------------------------------------------------------ >> > > ------------------------------------------------------- Jon Auman Systems Administrator National Evolutionary Synthesis Center Duke University http:www.nescent.org jon...@ne... ------------------------------------------------------ |
