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Re: [Treebase-devel] Can we do a new build? and proxy timeout?
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From: Hilmar L. <hl...@ne...> - 2010-04-01 01:07:18
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Do you need an absolute path that includes the server name, i.e., does a relative path not suffice? If you do need a full path, does that have to be generated server-side or can that also be done in JavaScript (which will yield the correct server name). -hilmar On Mar 31, 2010, at 8:02 PM, youjun guo wrote: > Bill, > > In treebase.org the server name in the phylowidget redirect url > return "localhost:8080" because we have a Apache server in front of > Tomcat, and Apache addressed the Tomact work this way. > > I think we have to use purl this time. > > Youjun > > > > > On Wed, Mar 31, 2010 at 4:46 PM, Jon Auman <jon...@du...> wrote: > I've redeployed and bumped the timeout to 15 minutes. > -jon > > On Mar 31, 2010, at 3:29 PM, William Piel wrote: > >> >> Hi all, >> >> Can we do a new build on production? (and dev or stage, if you have >> time) >> >> Youjun recently fixed the delete-tree function, and that will be >> useful for this guy's issue (see below). Also Youjun fixed the >> MacFirefox-PhyloWidget problem on the browse side of the equation. >> For that, we now pass the tree to the latest version of phylowidget >> stored on the phylowidget.org website (which doesn't have a problem >> with Mac-Firefox). >> >> We still have a problem with MacFirefox-PhyloWidget on the Submit >> side, but that can't be solved just by pointing to the latest copy >> on phylowidget.org because we have made custom changes to the code >> (for saving rerooted trees back the database). >> >> Finally, Michael Pirie's problem (below) seems to be the result of >> a time-out on headless-Mesquite ingest. Can we increase the time >> allotted to this process so as to avoid the time-out? (And, I >> should mention that when I deleted his extra matrix, I also got a >> proxy-timeout problem -- but when I came back to the submission, >> the matrix had been deleted. So again, the functions appear to go >> to completion eventually even though the browser shows a proxy >> error. If we could avoid the timeout, it would be better). >> >> Bill >> >> >> >> On Mar 31, 2010, at 3:18 PM, William Piel wrote: >> >>> Dear Michael Pirie: >>> >>> I think that the proxy error came from a time-out because the >>> parser was taking too long to commit the inserts (e.g. 298 x 11810 >>> = 3,519,380 inserts, not including all the other bits) -- but the >>> inserts happened anyway despite the time-out. And it looks like >>> you backed-up and re-clicked, so there were two matrices and two >>> sets of trees. I deleted one of the matrices -- but I don't want >>> to delete the extra set of trees until we've done a rebuild on our >>> deployment (we recently fixed some code having to do with deleting >>> trees). By tomorrow, feel free to delete the extra set of trees. >>> >>> So everything looks okay, despite the fact that the ingest did a >>> time-out on you. I'm going to suggest that our server gets reset >>> to allow for longer ingest times. >>> >>> regards, >>> >>> Bill >>> >>> >>> On Mar 31, 2010, at 10:54 AM, Michael D. Pirie via RT wrote: >>> >>>> >>>> Wed Mar 31 10:54:10 2010: Request 7708 was acted upon. >>>> Transaction: Ticket created by mp...@su... >>>> Queue: Treebase-help >>>> Subject: File upload problem submission 10367 >>>> Owner: Nobody >>>> Requestors: mp...@su... >>>> Status: new >>>> Ticket <URL: https://help.nescent.org/Ticket/Display.html?id=7708 > >>>> >>>> >>>> Dear Sir/Madam, >>>> I get the following error when attempting to upload a file to my >>>> submission 10367: >>>> >>>> >>>> Proxy Error >>>> >>>> The proxy server received an invalid response from an upstream >>>> server. >>>> The proxy server could not handle the request POST >>>> /treebase-web/user/uploadFile.html. >>>> >>>> Reason: Error reading from remote server >>>> >>>> Apache/2.2.3 (CentOS) Server at www.treebase.org Port 80 >>>> >>>> >>>> I'm attaching a zipped copy of the file - would it be possible to >>>> add >>>> this for me? >>>> Thanks and best wishes, >>>> >>>> -- >>>> Dr Michael D. Pirie >>>> Department of Biochemistry >>>> University of Stellenbosch >>>> Private Bag X1, MATIELAND 7602 >>>> Stellenbosch, Western Cape >>>> South Africa >>>> >>>> Tel: +27-21-8085841 >>>> Fax: +27-21-8085863 >>>> >>>> >>>> >>>> <TreeBASE 10367.zip> >>> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> Download Intel® Parallel Studio Eval >> Try the new software tools for yourself. Speed compiling, find bugs >> proactively, and fine-tune applications for parallel performance. >> See why Intel Parallel Studio got high marks during beta. >> http://p.sf.net/sfu/intel-sw-dev >> _______________________________________________ >> Treebase-devel mailing list >> Tre...@li... >> https://lists.sourceforge.net/lists/listinfo/treebase-devel > > ------------------------------------------------------- > Jon Auman > Systems Administrator > National Evolutionary Synthesis Center > Duke University > http:www.nescent.org > jon...@ne... > ------------------------------------------------------ > > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev_______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : =========================================================== |
