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Re: [Treebase-devel] Can we do a new build? and proxy timeout?
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From: youjun g. <you...@ya...> - 2010-04-01 00:02:44
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Bill, In treebase.org the server name in the phylowidget redirect url return "localhost:8080" because we have a Apache server in front of Tomcat, and Apache addressed the Tomact work this way. I think we have to use purl this time. Youjun On Wed, Mar 31, 2010 at 4:46 PM, Jon Auman <jon...@du...> wrote: > I've redeployed and bumped the timeout to 15 minutes. > -jon > > On Mar 31, 2010, at 3:29 PM, William Piel wrote: > > > Hi all, > > Can we do a new build on production? (and dev or stage, if you have time) > > Youjun recently fixed the delete-tree function, and that will be useful for > this guy's issue (see below). Also Youjun fixed the MacFirefox-PhyloWidget > problem on the browse side of the equation. For that, we now pass the tree > to the latest version of phylowidget stored on the phylowidget.org website > (which doesn't have a problem with Mac-Firefox). > > We still have a problem with MacFirefox-PhyloWidget on the Submit side, but > that can't be solved just by pointing to the latest copy on > phylowidget.org because we have made custom changes to the code (for > saving rerooted trees back the database). > > Finally, Michael Pirie's problem (below) seems to be the result of a > time-out on headless-Mesquite ingest. Can we increase the time allotted to > this process so as to avoid the time-out? (And, I should mention that when I > deleted his extra matrix, I also got a proxy-timeout problem -- but when I > came back to the submission, the matrix had been deleted. So again, the > functions appear to go to completion eventually even though the browser > shows a proxy error. If we could avoid the timeout, it would be better). > > Bill > > > > On Mar 31, 2010, at 3:18 PM, William Piel wrote: > > Dear Michael Pirie: > > > I think that the proxy error came from a time-out because the parser was > taking too long to commit the inserts (e.g. 298 x 11810 = 3,519,380 inserts, > not including all the other bits) -- but the inserts happened anyway despite > the time-out. And it looks like you backed-up and re-clicked, so there were > two matrices and two sets of trees. I deleted one of the matrices -- but I > don't want to delete the extra set of trees until we've done a rebuild on > our deployment (we recently fixed some code having to do with deleting > trees). By tomorrow, feel free to delete the extra set of trees. > > > So everything looks okay, despite the fact that the ingest did a time-out > on you. I'm going to suggest that our server gets reset to allow for longer > ingest times. > > > regards, > > > Bill > > > > On Mar 31, 2010, at 10:54 AM, Michael D. Pirie via RT wrote: > > > > Wed Mar 31 10:54:10 2010: Request 7708 was acted upon. > > Transaction: Ticket created by mp...@su... > > Queue: Treebase-help > > Subject: File upload problem submission 10367 > > Owner: Nobody > > Requestors: mp...@su... > > Status: new > > Ticket <URL: https://help.nescent.org/Ticket/Display.html?id=7708 > > > > > Dear Sir/Madam, > > I get the following error when attempting to upload a file to my > > submission 10367: > > > > Proxy Error > > > The proxy server received an invalid response from an upstream server. > > The proxy server could not handle the request POST > > /treebase-web/user/uploadFile.html. > > > Reason: Error reading from remote server > > > Apache/2.2.3 (CentOS) Server at www.treebase.org Port 80 > > > > I'm attaching a zipped copy of the file - would it be possible to add > > this for me? > > Thanks and best wishes, > > > -- > > Dr Michael D. Pirie > > Department of Biochemistry > > University of Stellenbosch > > Private Bag X1, MATIELAND 7602 > > Stellenbosch, Western Cape > > South Africa > > > Tel: +27-21-8085841 > > Fax: +27-21-8085863 > > > > > <TreeBASE 10367.zip> > > > > > > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > > ------------------------------------------------------- > Jon Auman > Systems Administrator > National Evolutionary Synthesis Center > Duke University > http:www.nescent.org > jon...@ne... > ------------------------------------------------------ > > > > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > Treebase-devel mailing list > Tre...@li... > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > |
