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[Treebase-guts] SF.net SVN: treebase:[646] trunk/treebase-web/src/main/webapp
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From: <rv...@us...> - 2010-03-22 23:05:06
|
Revision: 646
http://treebase.svn.sourceforge.net/treebase/?rev=646&view=rev
Author: rvos
Date: 2010-03-22 23:04:55 +0000 (Mon, 22 Mar 2010)
Log Message:
-----------
Made more xhtml compliant
Modified Paths:
--------------
trunk/treebase-web/src/main/webapp/WEB-INF/pages/about.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/contact.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/partnership.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/people.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/reference.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/studyKeywordSearchForm.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/technology.jsp
trunk/treebase-web/src/main/webapp/WEB-INF/pages/urlAPI.jsp
trunk/treebase-web/src/main/webapp/common/header.jsp
trunk/treebase-web/src/main/webapp/common/search-nav.jsp
trunk/treebase-web/src/main/webapp/common/sidebarLeft.jsp
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/about.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/about.jsp 2010-03-22 19:30:21 UTC (rev 645)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/about.jsp 2010-03-22 23:04:55 UTC (rev 646)
@@ -1,105 +1,103 @@
-<div id="contentRight">
- <div class="gutter">
- <h1>Overview</h1>
- <p>
- TreeBASE is a relational database designed to manage and explore information on
- phylogenetic relationships (Sanderson et al., 1993, 1994; Piel et al., 1996;
- Morel, 1996; Piel et al., 2000). It includes phylogenetic trees and data
- matrices, together with information about the relevant publication, taxa,
- morphological and sequence-based characters, and published analyses.
- </p>
- <p>
- The database is designed to allow retrieval of trees and data from different
- studies so that existing phylogenetic results may be reassessed, compared,
- combined and reused. Applications include:
- </p>
- <ul>
- <li>
- to locate information on the phylogeny of particular groups of interest.
- </li>
- <li>
- to obtain datasets for studies of character evolution, including general
- patterns across many groups, such as patterns of homoplasy.
- </li>
- <li>
- in studies of biogeography -- to retrieve trees with representatives in
- particular geographical areas.
- </li>
- <li>
- in studies of coevolution -- to retrieve information on host and parasite
- phylogenies.
- </li>
- <li>
- in studies of congruence and combination of data -- to retrieve all molecular
- and morphological phylogenies for particular groups.
- </li>
- <li>
- in studies of phylogenetic methods -- to retrieve all parsimony or maximum
- likelihood reconstructions, for example, or to download datasets of various
- sorts to test methods.
- </li>
- <li>
- to link together trees of particular groups into more inclusive phylogenies.
- </li>
- <li>
- to discover understudied groups -- a resource for students, funding agencies,
- etc.
- </li>
- <li>
- to retrieve phylogenetic information for use in conservation biology and the
- management of natural resources.
- </li>
- </ul>
- <h2>History, Funding, and Governance</h2>
- <p>
- The prototype for TreeBASE was first launched in 1994 (Sanderson et al. 1994,
- Piel et al., 2002) with funding from NSF SGER (NSF DEB 9318325: "A prototype
- database of phylogenetic studies"). The database underwent a complete
- redevelopment and redesign with funding from the <a href="http://www.phylo.org">
- Cyberinfrastructure for Phylogenetic Research project</a> (NSF EF 0331654:
- "Building the Tree of Life -- A National Resource for Phyloinformatics and
- Computational Phylogenetics").
- </p>
- <p>
- TreeBASE was released in March 2010 as one of the main products of The
- Phyloinformatics Research Foundation, Inc., a Connecticut non-profit
- corporation. The Foundation provides direction, governance, and continuity for
- software, data sharing, and communication standards to promote phyloinformatic
- research for the scientific community.
- </p>
- <p>
- The current version of the database is 2.0 (released March 2010), and is hosted
- by the National Evolutionary Synthesis Center (<a href="http://www.nescent.org">
- NESCent</a>). In previous years the database has been hosted by the
- <a href="http://www.peabody.yale.edu/">Yale Peabody Museum</a>, the
- <a href="http://www.sdsc.edu">San Diego Supercomputer Center</a>, the
- <a href="http://www.buffalo.edu">University at Buffalo</a>,
- <a href="http://www.harvard.edu">Harvard University</a>,
- <a href="http://www.leiden.edu">Leiden University</a>, and the
- <a href="http://www.ucdavid.edu">University of California, Davis</a>.
- </p>
- <h2>Related resources</h2>
- <ul>
- <li><a href="http://eol.org">Encyclopedia of Life</a>: A new project to create an
- online reference source and database for every one of the 1.8 million species that
- are named and known on this planet.</li>
- <li><a href="http://tolweb.org">Tree of Life Web Project</a>: A collaborative
- effort of biologists and nature enthusiasts from around the world. On more than
- 10,000 World Wide Web pages, the project provides information about biodiversity,
- the characteristics of different groups of organisms, and their evolutionary history</li>
- <li><a href="http://mesquiteproject.org">Mesquite</a>: Experimental, modular
- software for evolutionary biology, designed to help biologists analyze comparative
- data about organisms in a phylogenetic context.
- </li>
- </ul>
- <h2>Logo</h2>
- <p>
- The logo displayed on the TreeBASE web-application has been adapted to match the
- color style of the website. Please use the logo shown here for linking to or citing
- TreeBASE.
- <center>
- <img src="images/TreeBASE.png" alt="TreeBASE Logo" width="108" height="66" />
- </center>
- </p>
- </div>
+<div class="gutter">
+ <h1>Overview</h1>
+ <p>
+ TreeBASE is a relational database designed to manage and explore information on
+ phylogenetic relationships (Sanderson et al., 1993, 1994; Piel et al., 1996;
+ Morel, 1996; Piel et al., 2000). It includes phylogenetic trees and data
+ matrices, together with information about the relevant publication, taxa,
+ morphological and sequence-based characters, and published analyses.
+ </p>
+ <p>
+ The database is designed to allow retrieval of trees and data from different
+ studies so that existing phylogenetic results may be reassessed, compared,
+ combined and reused. Applications include:
+ </p>
+ <ul>
+ <li>
+ to locate information on the phylogeny of particular groups of interest.
+ </li>
+ <li>
+ to obtain datasets for studies of character evolution, including general
+ patterns across many groups, such as patterns of homoplasy.
+ </li>
+ <li>
+ in studies of biogeography -- to retrieve trees with representatives in
+ particular geographical areas.
+ </li>
+ <li>
+ in studies of coevolution -- to retrieve information on host and parasite
+ phylogenies.
+ </li>
+ <li>
+ in studies of congruence and combination of data -- to retrieve all molecular
+ and morphological phylogenies for particular groups.
+ </li>
+ <li>
+ in studies of phylogenetic methods -- to retrieve all parsimony or maximum
+ likelihood reconstructions, for example, or to download datasets of various
+ sorts to test methods.
+ </li>
+ <li>
+ to link together trees of particular groups into more inclusive phylogenies.
+ </li>
+ <li>
+ to discover understudied groups -- a resource for students, funding agencies,
+ etc.
+ </li>
+ <li>
+ to retrieve phylogenetic information for use in conservation biology and the
+ management of natural resources.
+ </li>
+ </ul>
+ <h2>History, Funding, and Governance</h2>
+ <p>
+ The prototype for TreeBASE was first launched in 1994 (Sanderson et al. 1994,
+ Piel et al., 2002) with funding from NSF SGER (NSF DEB 9318325: "A prototype
+ database of phylogenetic studies"). The database underwent a complete
+ redevelopment and redesign with funding from the <a href="http://www.phylo.org">
+ Cyberinfrastructure for Phylogenetic Research project</a> (NSF EF 0331654:
+ "Building the Tree of Life -- A National Resource for Phyloinformatics and
+ Computational Phylogenetics").
+ </p>
+ <p>
+ TreeBASE was released in March 2010 as one of the main products of The
+ Phyloinformatics Research Foundation, Inc., a Connecticut non-profit
+ corporation. The Foundation provides direction, governance, and continuity for
+ software, data sharing, and communication standards to promote phyloinformatic
+ research for the scientific community.
+ </p>
+ <p>
+ The current version of the database is 2.0 (released March 2010), and is hosted
+ by the National Evolutionary Synthesis Center (<a href="http://www.nescent.org">
+ NESCent</a>). In previous years the database has been hosted by the
+ <a href="http://www.peabody.yale.edu/">Yale Peabody Museum</a>, the
+ <a href="http://www.sdsc.edu">San Diego Supercomputer Center</a>, the
+ <a href="http://www.buffalo.edu">University at Buffalo</a>,
+ <a href="http://www.harvard.edu">Harvard University</a>,
+ <a href="http://www.leiden.edu">Leiden University</a>, and the
+ <a href="http://www.ucdavid.edu">University of California, Davis</a>.
+ </p>
+ <h2>Related resources</h2>
+ <ul>
+ <li><a href="http://eol.org">Encyclopedia of Life</a>: A new project to create an
+ online reference source and database for every one of the 1.8 million species that
+ are named and known on this planet.</li>
+ <li><a href="http://tolweb.org">Tree of Life Web Project</a>: A collaborative
+ effort of biologists and nature enthusiasts from around the world. On more than
+ 10,000 World Wide Web pages, the project provides information about biodiversity,
+ the characteristics of different groups of organisms, and their evolutionary history</li>
+ <li><a href="http://mesquiteproject.org">Mesquite</a>: Experimental, modular
+ software for evolutionary biology, designed to help biologists analyze comparative
+ data about organisms in a phylogenetic context.
+ </li>
+ </ul>
+ <h2>Logo</h2>
+ <p>
+ The logo displayed on the TreeBASE web-application has been adapted to match the
+ color style of the website. Please use the logo shown here for linking to or citing
+ TreeBASE.
+ </p>
+ <div style="width:100%;text-align:center">
+ <img src="images/TreeBASE.png" alt="TreeBASE Logo" width="108" height="66" />
+ </div>
</div>
\ No newline at end of file
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/contact.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/contact.jsp 2010-03-22 19:30:21 UTC (rev 645)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/contact.jsp 2010-03-22 23:04:55 UTC (rev 646)
@@ -1,46 +1,40 @@
-<div id="contentRight">
- <div class="gutter">
- <h1>Contacts</h1>
- <h2>Help</h2>
- <p>
- For questions about data submission and data content, please
- contact the TreeBASE helpdesk:
- <a href="mailto:help@treebase.org">help@treebase.org</a>
- </p>
+<div class="gutter">
+ <h1>Contacts</h1>
+ <h2>Help</h2>
+ <p>
+ For questions about data submission and data content, please
+ contact the TreeBASE helpdesk:
+ <a href="mailto:help@treebase.org">help@treebase.org</a>
+ </p>
- <h2>Bugs</h2>
- <p>
- To report software bugs, browser conflicts, and ergonomic
- inefficiencies, please email your issue report to the TreeBASE bug queue:
- <a href="mailto:bugs@treebase.org">bugs@treebase.org</a>
- </p>
+ <h2>Bugs</h2>
+ <p>
+ To report software bugs, browser conflicts, and ergonomic
+ inefficiencies, please email your issue report to the TreeBASE bug queue:
+ <a href="mailto:bugs@treebase.org">bugs@treebase.org</a>
+ </p>
- <p>
- Alternatively, you can enter a bug report directly into our
- SourceForge online bug tracker. For that, please follow these steps:
- </p>
- <ol style="list-style-type:upper-roman">
- <li>If you have a SourceForge account, log in to it and
- proceed to (II) below. Otherwise:</li>
-
- <ol>
- <li>Visit <a
- href="http://sourceforge.net/account/registration/">http://sourceforge.net/account/registration/</a>
- and fill in the form.</li>
-
- <li>After you confirm the account creation by email, log in at <a
- href="http://sourceforge.net/account/login.php">http://sourceforge.net/account/login.php</a></li>
- </ol>
-
- <li> Visit <a
- href="https://sourceforge.net/tracker2/?group_id=248804&atid=1126676">
- https://sourceforge.net/tracker2/?group_id=248804&atid=1126676</a>. On this page you can browse the bug database.</li>
+ <p>
+ Alternatively, you can enter a bug report directly into our
+ SourceForge online bug tracker. For that, please follow these steps:
+ </p>
+ <ol style="list-style-type:upper-roman">
+ <li>If you have a SourceForge account, log in to it and
+ proceed to (II) below. Otherwise visit <a
+ href="http://sourceforge.net/account/registration/">
+ http://sourceforge.net/account/registration/</a>
+ and fill in the form. After you confirm the account creation by email, log in at <a
+ href="http://sourceforge.net/account/login.php">http://sourceforge.net/account/login.php
+ </a></li>
+
+ <li> Visit <a
+ href="https://sourceforge.net/tracker2/?group_id=248804&atid=1126676">
+ https://sourceforge.net/tracker2/?group_id=248804&atid=1126676</a>. On this page you can browse the bug database.</li>
- <li>Click the "add new" button. Add the
- description of the bug. Long outputs or error messages can be attached as
- separate files if you prefer. Click "add artifact" to submit the report.</li>
- </ol>
- </div>
+ <li>Click the "add new" button. Add the
+ description of the bug. Long outputs or error messages can be attached as
+ separate files if you prefer. Click "add artifact" to submit the report.</li>
+ </ol>
</div>
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp 2010-03-22 19:30:21 UTC (rev 645)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp 2010-03-22 23:04:55 UTC (rev 646)
@@ -1,326 +1,350 @@
-<div id="contentRight">
<div class="gutter">
-<h1>Journals</h1>
-<p>In addition to providing a digital library, TreeBASE serves the
-scientific community by offering journal editors and reviewers special
-advanced anonymous access to submitted data. This access improves the
-quality of the review process because reviewers can inspect and evaluate
-the data, and in turn that also improves the quality of data in
-TreeBASE. Below is a list of journals that recommend or require
-submission to TreeBASE as an integral part of their publication
-policies. We encourage other journals and scientific societies to do the
-same because archiving and sharing of scientific data is critical for
-promoting subsequent reuse of published data, leveraging the cumulative
-knowledge of science, and maximizing the impact of scientific
-publications on future research.</p>
-<table>
- <tr>
- <td valign="top">
- <p><b>Journal Hyperlink</b></p>
- </td>
- <td>
- <p><b>PhyloWS URL to Studies in TreeBASE</b><br>
- (note: add "&format=rss1" to the end of each URL to use
- it in your favorite RSS reader)</p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.wiley.com/bw/journal.asp?ref=0014-3820"
- title="Evolution"> <img class="journal"
- src="images/journal_files/image001.gif" alt="Evolution"/> </a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DEvolution"
- title="Find records in TreeBASE for articles published in Evolution">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DEvolution
- </a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a
- href="http://www3.interscience.wiley.com/journal/119423602/home">
- <img class="journal"
- src="images/journal_files/image002.jpg"> </a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Evolutionary+Applications%22"
- title="Find records in TreeBASE for articles published in Evolutionary Applications">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Evolutionary+Applications%22
- </a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a
- href="http://www.elsevier.com/wps/find/journaldescription.cws_home/720691/description#description">
+ <h1>Journals</h1>
+ <p>In addition to providing a digital library, TreeBASE serves the
+ scientific community by offering journal editors and reviewers special
+ advanced anonymous access to submitted data. This access improves the
+ quality of the review process because reviewers can inspect and evaluate
+ the data, and in turn that also improves the quality of data in
+ TreeBASE. Below is a list of journals that recommend or require
+ submission to TreeBASE as an integral part of their publication
+ policies. We encourage other journals and scientific societies to do the
+ same because archiving and sharing of scientific data is critical for
+ promoting subsequent reuse of published data, leveraging the cumulative
+ knowledge of science, and maximizing the impact of scientific
+ publications on future research.</p>
+ <table>
+ <tr>
+ <td valign="top">
+ <p><b>Journal Hyperlink</b></p>
+ </td>
+ <td>
+ <p><b>PhyloWS URL to Studies in TreeBASE</b><br/>
+ (note: add "&format=rss1" to the end of each URL to use
+ it in your favorite RSS reader)</p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://www.wiley.com/bw/journal.asp?ref=0014-3820"
+ title="Evolution">
+ <img class="journal"
+ src="images/journal_files/image001.gif" alt="Evolution"/>
+ </a>
+ </p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DEvolution"
+ title="Find records in TreeBASE for articles published in Evolution">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DEvolution
+ </a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p>
+ <a
+ href="http://www3.interscience.wiley.com/journal/119423602/home">
+ <img class="journal"
+ src="images/journal_files/image002.jpg" alt="Evolutionary Applications"/>
+ </a>
+ </p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Evolutionary+Applications%22"
+ title="Find records in TreeBASE for articles published in Evolutionary Applications">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Evolutionary+Applications%22
+ </a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p>
+ <a
+ href="http://www.elsevier.com/wps/find/journaldescription.cws_home/720691/description#description">
+ <img class="journal"
+ src="images/journal_files/image003.jpg" alt="Fungal Biology"/>
+ </a>
+ </p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Biology%22"
+ title="Find records in TreeBASE for articles published in Fungal Biology">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Biology%22
+ </a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p>
+ <a href="http://www.publish.csiro.au/nid/120.htm">
+ <img class="journal"
+ src="images/journal_files/image004.gif"
+ alt="Invertebrate Systematics" />
+ </a>
+ </p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Invertebrate+Systematics%22"
+ title="Find records in TreeBASE for articles published in Invertebrate Systematics">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Invertebrate+Systematics%22
+ </a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://www.msafungi.org/">
+ <img class="journal" src="images/journal_files/image005.gif" alt="Mycologia" /></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycologia"
+ title="Find records in TreeBASE for articles published in Mycologia">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycologia</a>
+ </p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a
+ href="http://www.springer.com/life+sciences/plant+sciences/journal/11557">
<img class="journal"
- src="images/journal_files/image003.jpg" /></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Biology%22"
- title="Find records in TreeBASE for articles published in Fungal Biology">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Biology%22
- </a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.publish.csiro.au/nid/120.htm">
- <img class="journal"
- src="images/journal_files/image004.gif"
- alt="Invertebrate Systematics" /> </a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Invertebrate+Systematics%22"
- title="Find records in TreeBASE for articles published in Invertebrate Systematics">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Invertebrate+Systematics%22
- </a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.msafungi.org/"> <img class="journal" src="images/journal_files/image005.gif"
- alt="Join MSA" /></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycologia"
- title="Find records in TreeBASE for articles published in Mycologia">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycologia</a>
- </p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a
- href="http://www.springer.com/life+sciences/plant+sciences/journal/11557">
- <img class="journal"
- src="images/journal_files/image006.jpg" alt="Get MycPro"/> </a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Progress%22"
- title="Find records in TreeBASE for articles published in Mycologial Progress">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Progress%22</a>
- </p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a
- href="http://www.elsevier.com/wps/find/journaldescription.cws_home/707043/description#description">
- <img class="journal"
- src="images/journal_files/image007.gif" alt="Join BMS">
- </a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Research%22"
- title="Find records in TreeBASE for articles published in Mycologial Research">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Research%22</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a
- href="http://www.springer.com/life+sciences/microbiology/journal/10267">
- <img class="journal"
- src="images/journal_files/image008.gif" alt=Mycoscience></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycoscience"
- title="Find records in TreeBASE for articles published in Mycoscience">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycoscience</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.mycosphere.org/"><img class="journal" src="images/journal_files/image009.jpg"></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycosphere"
- title="Find records in TreeBASE for articles published in Mycosphere">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycosphere</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a
- href="http://www.elsevier.com/wps/find/journaldescription.cws_home/701789/description#description">
- <img class="journal"
- src="images/journal_files/image010.gif"
- alt="Organisms, Diversity, and Evolution"></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Organisms+Diversity+&+Evolution%22"
- title="Find records in TreeBASE for articles published in Organisms Diversity & Evolution">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Organisms+Diversity+&+Evolution%22</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.persoonia.org/"><img class="journal" src="images/journal_files/image011.jpg"></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPersoonia"
- title="Find records in TreeBASE for articles published in Persoonia">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPersoonia</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://apsjournals.apsnet.org/loi/phyto?cookieSet=1"
- title=link> <img class="journal"
- src="images/journal_files/image012.jpg" alt="Join APS"></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPhytopahology"
- title="Find records in TreeBASE for articles published in Phytopahology">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPhytopahology</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.apsnet.org/pd/"><img class="journal" src="images/journal_files/image013.jpg"></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Disease%22"
- title="Find records in TreeBASE for articles published in Plant Disease">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Disease%22</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.rhodora.org/Rhodora.html"><img
- class="journal"
- src="images/journal_files/image014.gif" alt="Rhodora"></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DRhodora"
- title="Find records in TreeBASE for articles published in Rhodora">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DRhodora</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a
- href="http://www.rbg.vic.gov.au/science/information-and-resources/science-publications/muelleria">
- <img class="journal"
- src="images/journal_files/image015.jpg"></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMuelleria"
- title="Find records in TreeBASE for articles published in Muelleria">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMuelleria</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.studiesinmycology.org/"><img class="journal" src="images/journal_files/image016.gif"
- alt="Studies in Mycology"></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Studies+in+Mycology%22"
- title="Find records in TreeBASE for articles published in Studies in Mycology">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Studies+in+Mycology%22</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://systbiol.org/"><img class="journal" src="images/journal_files/image017.gif" alt="Join SSB"/>
- </a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Biology%22"
- title="Find records in TreeBASE for articles published in Systematic Biology">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Biology%22</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://www.sysbot.org/"><img class="journal" src="images/journal_files/image018.gif"
- alt="Join ASPT"/></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Botany%22"
- title="Find records in TreeBASE for articles published in Systematic Botany">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Botany%22</a></p>
- </td>
- </tr>
- <tr>
- <td>
- <p><a href="http://tropical-bryology.org/"><img class="journal" src="images/journal_files/image019.jpg"/></a></p>
- </td>
- <td>
- <p><a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Tropical+Bryology%22"
- title="Find records in TreeBASE for articles published in Tropical Bryology">
- http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Tropical+Bryology%22</a></p>
- </td>
- </tr>
-</table>
+ src="images/journal_files/image006.jpg" alt="Mycologial Progress"/> </a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Progress%22"
+ title="Find records in TreeBASE for articles published in Mycologial Progress">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Progress%22</a>
+ </p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a
+ href="http://www.elsevier.com/wps/find/journaldescription.cws_home/707043/description#description">
+ <img class="journal"
+ src="images/journal_files/image007.gif" alt="Mycologial Research"/>
+ </a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Research%22"
+ title="Find records in TreeBASE for articles published in Mycologial Research">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Research%22</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a
+ href="http://www.springer.com/life+sciences/microbiology/journal/10267">
+ <img class="journal"
+ src="images/journal_files/image008.gif" alt="Mycoscience"/></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycoscience"
+ title="Find records in TreeBASE for articles published in Mycoscience">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycoscience</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://www.mycosphere.org/">
+ <img class="journal" src="images/journal_files/image009.jpg" alt="Mycosphere"/></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycosphere"
+ title="Find records in TreeBASE for articles published in Mycosphere">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycosphere</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a
+ href="http://www.elsevier.com/wps/find/journaldescription.cws_home/701789/description#description">
+ <img class="journal"
+ src="images/journal_files/image010.gif"
+ alt="Organisms, Diversity, and Evolution"/></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Organisms+Diversity+&+Evolution%22"
+ title="Find records in TreeBASE for articles published in Organisms Diversity & Evolution">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Organisms+Diversity+&+Evolution%22</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://www.persoonia.org/">
+ <img class="journal" src="images/journal_files/image011.jpg" alt="Persoonia"/></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPersoonia"
+ title="Find records in TreeBASE for articles published in Persoonia">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPersoonia</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p>
+ <a href="http://apsjournals.apsnet.org/loi/phyto?cookieSet=1">
+ <img
+ class="journal"
+ src="images/journal_files/image012.jpg"
+ alt="Phytopahology"/>
+ </a>
+ </p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPhytopahology"
+ title="Find records in TreeBASE for articles published in Phytopahology">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPhytopahology</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://www.apsnet.org/pd/">
+ <img class="journal" src="images/journal_files/image013.jpg" alt="Plant Disease"/>
+ </a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Disease%22"
+ title="Find records in TreeBASE for articles published in Plant Disease">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Disease%22</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://www.rhodora.org/Rhodora.html"><img
+ class="journal"
+ src="images/journal_files/image014.gif" alt="Rhodora"/></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DRhodora"
+ title="Find records in TreeBASE for articles published in Rhodora">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DRhodora</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a
+ href="http://www.rbg.vic.gov.au/science/information-and-resources/science-publications/muelleria">
+ <img class="journal"
+ src="images/journal_files/image015.jpg" alt="Muelleria"/></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMuelleria"
+ title="Find records in TreeBASE for articles published in Muelleria">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMuelleria</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://www.studiesinmycology.org/">
+ <img class="journal" src="images/journal_files/image016.gif"
+ alt="Studies in Mycology"/></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Studies+in+Mycology%22"
+ title="Find records in TreeBASE for articles published in Studies in Mycology">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Studies+in+Mycology%22</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://systbiol.org/">
+ <img class="journal" src="images/journal_files/image017.gif" alt="Systematic Biology"/>
+ </a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Biology%22"
+ title="Find records in TreeBASE for articles published in Systematic Biology">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Biology%22</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://www.sysbot.org/">
+ <img class="journal" src="images/journal_files/image018.gif"
+ alt="Systematic Botany"/></a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Botany%22"
+ title="Find records in TreeBASE for articles published in Systematic Botany">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Botany%22</a></p>
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <p><a href="http://tropical-bryology.org/">
+ <img class="journal" src="images/journal_files/image019.jpg" alt="Tropical Bryology"/>
+ </a></p>
+ </td>
+ <td>
+ <p><a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Tropical+Bryology%22"
+ title="Find records in TreeBASE for articles published in Tropical Bryology">
+ http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Tropical+Bryology%22</a></p>
+ </td>
+ </tr>
+ </table>
+
+ <p><b>Other Journals with a Significant Presence in TreeBASE</b>: <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%2American+Journal+of+Botany%22"
+ title="American Journal of Botany">American Journal of Botany</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Annals+of+the+Missouri+Botanical+Garden%22"
+ title="Annals of the Missouri Botanical Garden">Annals of the
+ Missouri Botanical Garden</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Biological+Journal+of+the+Linnean+Society%22"
+ title="Biological Journal of the Linnean Society">Biological
+ Journal of the Linnean Society</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22BMC+Evolutionary+Biology%22"
+ title="BMC Evolutionary Biology">BMC Evolutionary Biology</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Canadian+Journal+of+Botany%22"
+ title="Canadian Journal of Botany">Canadian Journal of Botany</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DCladistics"
+ title="Cladistics">Cladistics</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Diversity%22"
+ title="Fungal Diversity">Fungal Diversity</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22International+Journal+of+Plant+Sciences%22"
+ title="International Journal of Plant Sciences">International
+ Journal of Plant Sciences</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Journal+of+Phycology%22"
+ title="Journal of Phycology">Journal of Phycology</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Biology+and+Evolution%22"
+ title="Molecular Biology and Evolution">Molecular Biology and
+ Evolution</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Ecology%22"
+ title="Molecular Ecology">Molecular Ecology</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Phylogenetics+and+Evolution%22"
+ title="Molecular Phylogenetics and Evolution">Molecular
+ Phylogenetics and Evolution</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Systematics+and+Evolution%22"
+ title="Plant Systematics and Evolution">Plant Systematics and
+ Evolution</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Proceeding+of+the+National+Academy+of+Sciences+of+the+United+States+of+America%22"
+ title="Proceeding of the National Academy of Sciences of the United States of America">
+ Proceeding of the National Academy of Sciences of the United States of
+ America</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Proceedings+of+the+Royal+Society+B%22"
+ title="Proceedings of the Royal Society B">Proceedings of the Royal
+ Society B</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DTaxon"
+ title="Taxon">Taxon</a>; <a
+ href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DZootaxa"
+ title="Zootaxa">Zootaxa</a></p>
-<p><b>Other Journals with a Significant Presence in TreeBASE</b>: <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%2American+Journal+of+Botany%22"
- title="American Journal of Botany">American Journal of Botany</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Annals+of+the+Missouri+Botanical+Garden%22"
- title="Annals of the Missouri Botanical Garden">Annals of the
-Missouri Botanical Garden</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Biological+Journal+of+the+Linnean+Society%22"
- title="Biological Journal of the Linnean Society">Biological
-Journal of the Linnean Society</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22BMC+Evolutionary+Biology%22"
- title="BMC Evolutionary Biology">BMC Evolutionary Biology</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Canadian+Journal+of+Botany%22"
- title="Canadian Journal of Botany">Canadian Journal of Botany</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DCladistics"
- title="Cladistics">Cladistics</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Diversity%22"
- title="Fungal Diversity">Fungal Diversity</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22International+Journal+of+Plant+Sciences%22"
- title="International Journal of Plant Sciences">International
-Journal of Plant Sciences</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Journal+of+Phycology%22"
- title="Journal of Phycology">Journal of Phycology</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Biology+and+Evolution%22"
- title="Molecular Biology and Evolution">Molecular Biology and
-Evolution</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Ecology%22"
- title="Molecular Ecology">Molecular Ecology</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Phylogenetics+and+Evolution%22"
- title="Molecular Phylogenetics and Evolution">Molecular
-Phylogenetics and Evolution</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Systematics+and+Evolution%22"
- title="Plant Systematics and Evolution">Plant Systematics and
-Evolution</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Proceeding+of+the+National+Academy+of+Sciences+of+the+United+States+of+America%22"
- title="Proceeding of the National Academy of Sciences of the United States of America">
-Proceeding of the National Academy of Sciences of the United States of
-America</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Proceedings+of+the+Royal+Society+B%22"
- title="Proceedings of the Royal Society B">Proceedings of the Royal
-Society B</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DTaxon"
- title="Taxon">Taxon</a>; <a
- href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DZootaxa"
- title="Zootaxa">Zootaxa</a></p>
-
-</div>
</div>
\ No newline at end of file
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/partnership.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/partnership.jsp 2010-03-22 19:30:21 UTC (rev 645)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/partnership.jsp 2010-03-22 23:04:55 UTC (rev 646)
@@ -1,59 +1,62 @@
-<div id="contentRight">
- <div class="gutter">
- <h1>Partnerships</h1>
- <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px">
- <img
- width="160"
- src="images/nescent_logo.jpg"
- style="display:inline;float:left;margin-right:15px"/>The
- <a
- href="http://www.nescent.org"
- title="National Evolutionary Synthesis Center (NESCent)">National
- Evolutionary Synthesis Center (NESCent)
- </a> is a national center sponsored by NSF with the mission of facilitating
- synthetic research in evolutionary biology. Through a partnership with CIPRES
- and TreeBASE, NESCent is serving to deploy, maintain, and host TreeBASE.
- </p>
- <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px">
- <img
- width="160"
- height="100"
- src="images/partnership/image002.jpg"
- style="display:inline;float:left;margin-right:15px"/>
- <a
- href="http://www.datadryad.org"
- title="Dryad">Dryad</a> is an open digital repository of author-submitted
- published data which supports many journals in evolutionary biology and ecology.
- Metadata in TreeBASE is being harvested and mirrored by Dryad using the TreeBASE
- OAI-PMH service. Metadata for existing TreeBASE records is being enriched through
- manual and semi-automated mechanisms. Dryad is also forwarding phylogenetic data
- depositions to TreeBASE at the request of the author. These activities are
- funded by NSF DBI 0743720: "A Digital Repository for Preservation and
- Sharing of Data Underlying Published Works in Evolutionary Biology."
- </p>
- <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px">
- <img
- width="160"
- height="100"
- src="images/partnership/image003.jpg"
- style="display:inline;float:left;margin-right:15px"/>
- TreeBASE currently makes use of <a
- href="http://www.ubio.org/index.php?pagename=services_overview"
- title="uBio's taxonomic name services">uBio's taxonomic name services</a>
- to match taxon labels in submitted trees and matrices against uBio's dictionary
- of nomenclature. TreeBASE further uses this mapping to acquire and store <a
- href="http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=howlink"
- title="NCBI taxids">NCBI taxids</a>. In prior years, TreeBASE has provided a bulk list
- of its taxonomy to uBio in order to store links to TreeBASE, and there are plans to
- automate this procedure in the future.
- </p>
- <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px">
- <img
- width="160"
- height="100"
- src="images/partnership/image004.jpg"
- style="display:inline;float:left;margin-right:15px"/>Many thanks to the National Science Foundation
- for their valuable support.
- </p>
- </div>
+<div class="gutter">
+ <h1>Partnerships</h1>
+ <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px">
+ <img
+ width="160"
+ src="images/nescent_logo.jpg"
+ style="display:inline;float:left;margin-right:15px"
+ alt="NESCent"/>The
+ <a
+ href="http://www.nescent.org"
+ title="National Evolutionary Synthesis Center (NESCent)">National
+ Evolutionary Synthesis Center (NESCent)
+ </a> is a national center sponsored by NSF with the mission of facilitating
+ synthetic research in evolutionary biology. Through a partnership with CIPRES
+ and TreeBASE, NESCent is serving to deploy, maintain, and host TreeBASE.
+ </p>
+ <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px">
+ <img
+ width="160"
+ height="100"
+ src="images/partnership/image002.jpg"
+ style="display:inline;float:left;margin-right:15px"
+ alt="Dryad"/>
+ <a
+ href="http://www.datadryad.org"
+ title="Dryad">Dryad</a> is an open digital repository of author-submitted
+ published data which supports many journals in evolutionary biology and ecology.
+ Metadata in TreeBASE is being harvested and mirrored by Dryad using the TreeBASE
+ OAI-PMH service. Metadata for existing TreeBASE records is being enriched through
+ manual and semi-automated mechanisms. Dryad is also forwarding phylogenetic data
+ depositions to TreeBASE at the request of the author. These activities are
+ funded by NSF DBI 0743720: "A Digital Repository for Preservation and
+ Sharing of Data Underlying Published Works in Evolutionary Biology."
+ </p>
+ <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px">
+ <img
+ width="160"
+ height="100"
+ src="images/partnership/image003.jpg"
+ style="display:inline;float:left;margin-right:15px"
+ alt="uBio"/>
+ TreeBASE currently makes use of <a
+ href="http://www.ubio.org/index.php?pagename=services_overview"
+ title="uBio's taxonomic name services">uBio's taxonomic name services</a>
+ to match taxon labels in submitted trees and matrices against uBio's dictionary
+ of nomenclature. TreeBASE further uses this mapping to acquire and store <a
+ href="http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=howlink"
+ title="NCBI taxids">NCBI taxids</a>. In prior years, TreeBASE has provided a bulk list
+ of its taxonomy to uBio in order to store links to TreeBASE, and there are plans to
+ automate this procedure in the future.
+ </p>
+ <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px">
+ <img
+ width="160"
+ height="100"
+ src="images/partnership/image004.jpg"
+ style="display:inline;float:left;margin-right:15px"
+ alt="NSF"/>
+ Many thanks to the National Science
+ Foundation for their valuable support.
+ </p>
</div>
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/people.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/people.jsp 2010-03-22 19:30:21 UTC (rev 645)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/people.jsp 2010-03-22 23:04:55 UTC (rev 646)
@@ -1,119 +1,117 @@
-<div id="contentRight">
- <div class="gutter">
- <h1>People</h1>
- <table class="peopleTable">
- <thead><tr><th colspan="6"><h2>Current contributors</h2></th></tr></thead>
- <tr>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Vladimir Gapeyev"/>
- <br/><strong>Vladimir Gapeyev</strong>
- <br/>Deployment Maintainer
- </td>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Youjun Guo"/>
- <br/><strong>Youjun Guo</strong>
- <br/>Developer
- </td>
- <td>
- <img src="images/people/hlapp.jpeg" width="81" height="108" alt="Hilmar Lapp"/>
- <br/><strong>Hilmar Lapp</strong>
- <br/>Deployment Manager
- </td>
- <td>
- <img src="images/people/bpiel.jpeg" width="81" height="108" alt="William Piel"/>
- <br/><strong>William Piel</strong>
- <br/>Content Editor
- <br />Prototype Dev
- </td>
- <td>
- <img src="images/people/vtannen.jpeg" width="81" height="108" alt="Val Tannen"/>
- <br/><strong>Val Tannen</strong>
- <br/>Development Leader
- </td>
- <td>
- <img src="images/people/rvos.jpg" width="81" height="108" alt="Rutger Vos"/>
- <br/><strong>Rutger Vos</strong>
- <br/>Developer
- <br/>API Design
- </td>
- </tr>
- </table>
-
- <table class="peopleTable">
- <thead><tr><th colspan="6"><h2>Past contributors</h2></th></tr></thead>
- <tr>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Lucie Chan"/>
- <br/><strong>Lucie Chan</strong>
- <br/>Developer
- </td>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Shirley Cohen"/>
- <br/><strong>Shirley Cohen</strong>
- <br/>Student Researcher
- </td>
- <td>
- <img src="images/people/mjdominus.jpeg" width="81" height="108" alt="Mark J. Dominus"/>
- <br/><strong>Mark J. Dominus</strong>
- <br/>Developer
- </td>
- <td>
- <img src="images/people/mdonoghue.gif" width="81" height="108" alt="Michael Donoghue"/>
- <br/><strong>Michael Donoghue</strong>
- <br/>Concept
- </td>
- <td>
- <img src="images/people/teriksson.gif" width="81" height="108" alt="Torsten Eriksson"/>
- <br/><strong>Torsten Eriksson</strong>
- <br/>Prototype Developer
- </td>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Madhusudan Gujral"/>
- <br/><strong>Madhusudan Gujral</strong>
- <br/>Developer
- </td>
- </tr>
- <tr>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Chris Henze"/>
- <br/><strong>Chris Henze</strong>
- <br/>Prototype Developer
- </td>
- <td>
- <img src="images/people/krice.gif" width="81" height="108" alt="Ken Rice"/>
- <br/><strong>Ken Rice</strong>
- <br/>Prototype Developer
- </td>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Jin Ruan"/>
- <br/><strong>Jin Ruan</strong>
- <br/>Developer
- </td>
- <td>
- <img src="images/people/msanderson.gif" width="81" height="108" alt="Mike Sanderson"/>
- <br/><strong>Mike Sanderson</strong>
- <br/>Concept
- <br/>Prototype Dev
- </td>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Can van Tran"/>
- <br/><strong>Can van Tran</strong>
- <br/>Developer
- </td>
- <td>
- <img src="images/people/anon.jpg" width="81" height="108" alt="Tracy Zhao"/>
- <br/><strong>Tracy Zhao</strong>
- <br/>Developer
- </td>
- </tr>
- </table>
-
- <h2>Phyloinformatics Research Foundation Inc, Board</h2>
- <ul>
- <li>Michael Donoghue</li>
- <li>David Maddison</li>
- <li>William Piel</li>
- <li>Val Tannen</li>
- </ul>
- </div>
+<div class="gutter">
+ <h1>People</h1>
+ <table class="peopleTable">
+ <thead><tr><th colspan="6"><h2>Current contributors</h2></th></tr></thead>
+ <tr>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Vladimir Gapeyev"/>
+ <br/><strong>Vladimir Gapeyev</strong>
+ <br/>Deployment Maintainer
+ </td>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Youjun Guo"/>
+ <br/><strong>Youjun Guo</strong>
+ <br/>Developer
+ </td>
+ <td>
+ <img src="images/people/hlapp.jpeg" width="81" height="108" alt="Hilmar Lapp"/>
+ <br/><strong>Hilmar Lapp</strong>
+ <br/>Deployment Manager
+ </td>
+ <td>
+ <img src="images/people/bpiel.jpeg" width="81" height="108" alt="William Piel"/>
+ <br/><strong>William Piel</strong>
+ <br/>Content Editor
+ <br />Prototype Dev
+ </td>
+ <td>
+ <img src="images/people/vtannen.jpeg" width="81" height="108" alt="Val Tannen"/>
+ <br/><strong>Val Tannen</strong>
+ <br/>Development Leader
+ </td>
+ <td>
+ <img src="images/people/rvos.jpg" width="81" height="108" alt="Rutger Vos"/>
+ <br/><strong>Rutger Vos</strong>
+ <br/>Developer
+ <br/>API Design
+ </td>
+ </tr>
+ </table>
+
+ <table class="peopleTable">
+ <thead><tr><th colspan="6"><h2>Past contributors</h2></th></tr></thead>
+ <tr>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Lucie Chan"/>
+ <br/><strong>Lucie Chan</strong>
+ <br/>Developer
+ </td>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Shirley Cohen"/>
+ <br/><strong>Shirley Cohen</strong>
+ <br/>Student Researcher
+ </td>
+ <td>
+ <img src="images/people/mjdominus.jpeg" width="81" height="108" alt="Mark J. Dominus"/>
+ <br/><strong>Mark J. Dominus</strong>
+ <br/>Developer
+ </td>
+ <td>
+ <img src="images/people/mdonoghue.gif" width="81" height="108" alt="Michael Donoghue"/>
+ <br/><strong>Michael Donoghue</strong>
+ <br/>Concept
+ </td>
+ <td>
+ <img src="images/people/teriksson.gif" width="81" height="108" alt="Torsten Eriksson"/>
+ <br/><strong>Torsten Eriksson</strong>
+ <br/>Prototype Developer
+ </td>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Madhusudan Gujral"/>
+ <br/><strong>Madhusudan Gujral</strong>
+ <br/>Developer
+ </td>
+ </tr>
+ <tr>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Chris Henze"/>
+ <br/><strong>Chris Henze</strong>
+ <br/>Prototype Developer
+ </td>
+ <td>
+ <img src="images/people/krice.gif" width="81" height="108" alt="Ken Rice"/>
+ <br/><strong>Ken Rice</strong>
+ <br/>Prototype Developer
+ </td>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Jin Ruan"/>
+ <br/><strong>Jin Ruan</strong>
+ <br/>Developer
+ </td>
+ <td>
+ <img src="images/people/msanderson.gif" width="81" height="108" alt="Mike Sanderson"/>
+ <br/><strong>Mike Sanderson</strong>
+ <br/>Concept
+ <br/>Prototype Dev
+ </td>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Can van Tran"/>
+ <br/><strong>Can van Tran</strong>
+ <br/>Developer
+ </td>
+ <td>
+ <img src="images/people/anon.jpg" width="81" height="108" alt="Tracy Zhao"/>
+ <br/><strong>Tracy Zhao</strong>
+ <br/>Developer
+ </td>
+ </tr>
+ </table>
+
+ <h2>Phyloinformatics Research Foundation Inc, Board</h2>
+ <ul>
+ <li>Michael Donoghue</li>
+ <li>David Maddison</li>
+ <li>William Piel</li>
+ <li>Val Tannen</li>
+ </ul>
</div>
\ No newline at end of file
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/reference.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/reference.jsp 2010-03-22 19:30:21 UTC (rev 645)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/reference.jsp 2010-03-22 23:04:55 UTC (rev 646)
@@ -1,88 +1,86 @@
-<div id="contentRight">
- <div class="gutter">
- <h1>References</h1>
- <p>
- <strong>Blake, J. A., C. J. Bult, M. J. Donoghue, J. Humphries, and C. Fields.</strong>
- 1994. Interoperability of biological databases: a meeting report.
- <em>Syst. Biol.</em> <strong>43</strong>:585-589.
- </p>
- <p>
- <strong>Donoghue, M. J.</strong>
- 1994. Progress and prospects in reconstructing plant phylogeny.
- <em>Ann. Missouri Bot. Gard.</em> <strong>81</strong>:405-418.
- </p>
- <p>
- <strong>Donoghue, M. J. and D. D. Ackerly.</strong>
- 1996. Phylogenetic uncertainties and sensitivity analyses in comparative biology.
- <em>Phil. Trans. R. Soc. London B, 351: 1241-1249.</em>
- </p>
- <p>
- <strong>Maddison, W. P. and D. R. Maddison.</strong>
- 1992.
- <em>MacClade: Interactive Analysis of Phylogeny and Character Evolution, Vers. 3.0.</em>
- Sunderland, MA: Sinauer Assoc.
- </p>
- <p>
- <strong>Morell, V.</strong>
- 1996. TreeBASE: the roots of phylogeny.
- <em>Science</em> <strong>273</strong>: 569.
- </p>
- <p>
- <strong>Piel, W. H.</strong>
- 2003. "Phyloinformatics and Tree Networks." In:
- <strong>Wu, C. H., P. Wang, and J. T. L. Wang,</strong> eds.
- <em>Computational Biology and Genome Informatics</em>. World Scientific Press.
- </p>
- <p>
- <strong>Piel, W. H., M. J. Donoghue, and M. J. Sanderson.</strong>
- 2002. "Tree...
[truncated message content] |
