From: <rv...@us...> - 2010-03-21 11:40:33
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Revision: 641 http://treebase.svn.sourceforge.net/treebase/?rev=641&view=rev Author: rvos Date: 2010-03-21 11:40:26 +0000 (Sun, 21 Mar 2010) Log Message: ----------- Cleaned ugly HTML. Modified Paths: -------------- trunk/treebase-web/src/main/webapp/WEB-INF/pages/contact.jsp trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp trunk/treebase-web/src/main/webapp/WEB-INF/pages/partnership.jsp trunk/treebase-web/src/main/webapp/WEB-INF/pages/reference.jsp trunk/treebase-web/src/main/webapp/styles/styles.css Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/contact.jsp =================================================================== --- trunk/treebase-web/src/main/webapp/WEB-INF/pages/contact.jsp 2010-03-20 23:04:58 UTC (rev 640) +++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/contact.jsp 2010-03-21 11:40:26 UTC (rev 641) @@ -1,39 +1,46 @@ -<div class=Section1> +<div id="contentRight"> + <div class="gutter"> + <h1>Contacts</h1> + <h2>Help</h2> + <p> + For questions about data submission and data content, please + contact the TreeBASE helpdesk: + <a href="mailto:help@treebase.org">help@treebase.org</a> + </p> -<h1>Contacts</h1> + <h2>Bugs</h2> + <p> + To report software bugs, browser conflicts, and ergonomic + inefficiencies, please email your issue report to the TreeBASE bug queue: + <a href="mailto:bugs@treebase.org">bugs@treebase.org</a> + </p> -<h2>Help</h2> + <p> + Alternatively, you can enter a bug report directly into our + SourceForge online bug tracker. For that, please follow these steps: + </p> + <ol style="list-style-type:upper-roman"> + <li>If you have a SourceForge account, log in to it and + proceed to (II) below. Otherwise:</li> + + <ol> + <li>Visit <a + href="http://sourceforge.net/account/registration/">http://sourceforge.net/account/registration/</a> + and fill in the form.</li> + + <li>After you confirm the account creation by email, log in at <a + href="http://sourceforge.net/account/login.php">http://sourceforge.net/account/login.php</a></li> + </ol> + + <li> Visit <a + href="https://sourceforge.net/tracker2/?group_id=248804&atid=1126676"> + https://sourceforge.net/tracker2/?group_id=248804&atid=1126676</a>. On this page you can browse the bug database.</li> -<p>For questions about data submission and data content, please -contact the TreeBASE helpdesk: <a href="mailto:help@treebase.org">help@treebase.org</a></p> - -<h2>Bugs</h2> - -<p>To report software bugs, browser conflicts, and ergonomic -inefficiencies, please email your issue report to the TreeBASE bug queue: <a href="mailto:bugs@treebase.org">bugs@treebase.org</a></p> - -<p>Alternatively, you can enter a bug report directly into our -SourceForge online bug tracker. For that, please follow these steps:</p> - -<p>I. If you have a SourceForge account, log in to it and -proceed to (II) below. Otherwise:</p> - -<p>1. Visit <a -href="http://sourceforge.net/account/registration/" -title="http://sourceforge.net/account/registration/" id=wa5w>http://sourceforge.net/account/registration/</a> -and fill in the form.<br> -2. After you confirm the account creation by email, log in at <a -href="http://sourceforge.net/account/login.php" -title="http://sourceforge.net/account/login.php" id=uguh>http://sourceforge.net/account/login.php</a></p> - -<p>II. Visit <a -href="https://sourceforge.net/tracker2/?group_id=248804&atid=1126676" -title="https://sourceforge.net/tracker2/?group_id=248804&atid=1126676" -id="xjq:">https://sourceforge.net/tracker2/?group_id=248804&atid=1126676</a>. On this page you can browse the bug database.</p> - -<p>III. Click the "add new" button. Add the -description of the bug. Long outputs or error messages can be attached as -separate files if you prefer. Click "add artifact" to submit the report.</p> + <li>Click the "add new" button. Add the + description of the bug. Long outputs or error messages can be attached as + separate files if you prefer. Click "add artifact" to submit the report.</li> + </ol> + </div> </div> Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp =================================================================== --- trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp 2010-03-20 23:04:58 UTC (rev 640) +++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/journal.jsp 2010-03-21 11:40:26 UTC (rev 641) @@ -1,345 +1,326 @@ - - -<div class=Section1> - -<h1><span>Journals</span></h1> - -<p>In addition to providing a digital library, TreeBASE serves the scientific community -by offering journal editors and reviewers special advanced anonymous access to -submitted data. This access improves the quality of the review process because -reviewers can inspect and evaluate the data, and in turn that also improves the -quality of data in TreeBASE. Below is a list of journals that recommend or -require submission to TreeBASE as an integral part of their publication -policies. We encourage other journals and scientific societies to do the same -because archiving and sharing of scientific data is critical for promoting -subsequent reuse of published data, leveraging the cumulative knowledge of -science, and maximizing the impact of scientific publications on future -research. </p> - - -<table border=0 cellspacing=0 cellpadding=0 - style='background:white' id="p9:6"> - <tr> - <td valign=top style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><b>Journal Hyperlink</b></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><b>PhyloWS URL to Studies in TreeBASE</b><br> - (note: add "&format=rss1" to the end of each URL to use it in - your favorite RSS reader)</p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <span style='font-size:10.0pt'><a - href="http://www.wiley.com/bw/journal.asp?ref=0014-3820" title=link id=i1y.><img width=121 height=40 src="images/journal_files/image001.gif" - alt=Evolution align=bottom border=0></a></span></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DEvolution" - title="Find records in TreeBASE for articles published in Evolution" - id=snnr>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DEvolution</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <span style='font-size:10.0pt'><a - href="http://www3.interscience.wiley.com/journal/119423602/home" title=link - id=sik5><img border=0 width=121 height=40 - src="images/journal_files/image002.jpg"></a></span></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Evolutionary+Applications%22" - title="Find records in TreeBASE for articles published in Evolutionary Applications" - id="n15_">http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Evolutionary+Applications%22</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <span style='font-size:10.0pt'><a - href="http://www.elsevier.com/wps/find/journaldescription.cws_home/720691/description#description" - title=link id=ctp6><img border=0 width=121 height=40 - src="images/journal_files/image003.jpg"></a></span></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Biology%22" - title="Find records in TreeBASE for articles published in Fungal Biology" - id=z97n>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Biology%22</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <span style='font-size:10.0pt'><a - href="http://www.publish.csiro.au/nid/120.htm" title=link id=vixi><img border=0 width=121 height=40 - src="images/journal_files/image004.gif" alt="Invertebrate Systematics" align=bottom></a></span></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Invertebrate+Systematics%22" - title="Find records in TreeBASE for articles published in Invertebrate Systematics" - id=zv-p>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Invertebrate+Systematics%22</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <span style='font-size:10.0pt'><a href="http://www.msafungi.org/" title=link - id=i138><img border=0 width=121 height=40 - src="images/journal_files/image005.gif" alt="Join MSA" align=bottom></a></span></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycologia" - title="Find records in TreeBASE for articles published in Mycologia" - id=fgv3>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycologia</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <span style='font-size:10.0pt'><a - href="http://www.springer.com/life+sciences/plant+sciences/journal/11557" - title=link id=r0.d><img border=0 width=121 height=40 - src="images/journal_files/image006.jpg" alt="Get MycPro" align=bottom></a></span></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Progress%22" - title="Find records in TreeBASE for articles published in Mycologial Progress" - id="x_40">http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Progress%22</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <span style='font-size:10.0pt'><a - href="http://www.elsevier.com/wps/find/journaldescription.cws_home/707043/description#description" - title=link id=f3oo><img border=0 width=121 height=40 - src="images/journal_files/image007.gif" alt="Join BMS" align=bottom></a></span></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Research%22" - title="Find records in TreeBASE for articles published in Mycologial Research" - id=pm9.>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Research%22</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://www.springer.com/life+sciences/microbiology/journal/10267" - title=link id="ap:."><img border=0 width=121 height=40 - src="images/journal_files/image008.gif" alt=Mycoscience align=bottom></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycoscience" - title="Find records in TreeBASE for articles published in Mycoscience" - id=dr.h>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycoscience</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://www.mycosphere.org/" title=link id=bgaq><img border=0 width=121 height=40 - src="images/journal_files/image009.jpg"></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycosphere" - title="Find records in TreeBASE for articles published in Mycosphere" - id=hbsg>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycosphere</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a - href="http://www.elsevier.com/wps/find/journaldescription.cws_home/701789/description#description" - title=link id=cp74><img border=0 width=121 height=40 - src="images/journal_files/image010.gif" alt="Organisms, Diversity, and Evolution" - align=bottom></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Organisms+Diversity+&+Evolution%22" - title="Find records in TreeBASE for articles published in Organisms Diversity & Evolution" - id=lcqz>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Organisms+Diversity+&+Evolution%22</a></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://www.persoonia.org/" title=link id=w.mk><img border=0 width=121 height=40 - src="images/journal_files/image011.jpg"></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPersoonia" - title="Find records in TreeBASE for articles published in Persoonia" - id=fyta>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPersoonia</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://apsjournals.apsnet.org/loi/phyto?cookieSet=1" title=link - id=mjqe><img border=0 width=121 height=40 - src="images/journal_files/image012.jpg" alt="Join APS" align=bottom></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPhytopahology" - title="Find records in TreeBASE for articles published in Phytopahology" - id=g3p3>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPhytopahology</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://www.apsnet.org/pd/" title=link id=c0cs><img border=0 width=121 height=40 - src="images/journal_files/image013.jpg"></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Disease%22" - title="Find records in TreeBASE for articles published in Plant Disease" - id=yqwc>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Disease%22</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://www.rhodora.org/Rhodora.html" title=link id=jdv1><img border=0 width=121 height=40 - src="images/journal_files/image014.gif" alt=Rhodora align=bottom></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DRhodora" - title="Find records in TreeBASE for articles published in Rhodora" - id=pmzl>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DRhodora</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a - href="http://www.rbg.vic.gov.au/science/information-and-resources/science-publications/muelleria" - title=link id=u9eq><img border=0 width=121 height=40 - src="images/journal_files/image015.jpg"></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><span style='font-size:10.0pt'><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMuelleria" - title="Find records in TreeBASE for articles published in Muelleria" - id="psm:">http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMuelleria</a></span></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://www.studiesinmycology.org/" title=link id=s1hf><img border=0 width=121 height=40 - src="images/journal_files/image016.gif" alt="Studies in Mycology" align=bottom></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Studies+in+Mycology%22" - title="Find records in TreeBASE for articles published in Studies in Mycology" - id=ockh>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Studies+in+Mycology%22</a></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://systbiol.org/" title=link id=ljmi><img border=0 width=121 height=40 - src="images/journal_files/image017.gif" alt="Join SSB" align=bottom></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Biology%22" - title="Find records in TreeBASE for articles published in Systematic Biology" - id=an6v>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Biology%22</a></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://www.sysbot.org/" title=link id=t9z8><img border=0 width=121 height=40 - src="images/journal_files/image018.gif" alt="Join ASPT" align=bottom></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Botany%22" - title="Find records in TreeBASE for articles published in Systematic Botany" - id=n5tf>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Botany%22</a></p> - </td> - </tr> - <tr> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p> - <a href="http://tropical-bryology.org/" title=link id=n.b1><img border=0 width=121 height=40 - src="images/journal_files/image019.jpg"></a></p> - </td> - <td style='padding:1.8pt 1.8pt 1.8pt 1.8pt'> - <p><a - href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Tropical+Bryology%22" - title="Find records in TreeBASE for articles published in Tropical Bryology" - id=t8hh>http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Tropical+Bryology%22</a></p> - </td> - </tr> +<div id="contentRight"> +<div class="gutter"> +<h1>Journals</h1> +<p>In addition to providing a digital library, TreeBASE serves the +scientific community by offering journal editors and reviewers special +advanced anonymous access to submitted data. This access improves the +quality of the review process because reviewers can inspect and evaluate +the data, and in turn that also improves the quality of data in +TreeBASE. Below is a list of journals that recommend or require +submission to TreeBASE as an integral part of their publication +policies. We encourage other journals and scientific societies to do the +same because archiving and sharing of scientific data is critical for +promoting subsequent reuse of published data, leveraging the cumulative +knowledge of science, and maximizing the impact of scientific +publications on future research.</p> +<table> + <tr> + <td valign="top"> + <p><b>Journal Hyperlink</b></p> + </td> + <td> + <p><b>PhyloWS URL to Studies in TreeBASE</b><br> + (note: add "&format=rss1" to the end of each URL to use + it in your favorite RSS reader)</p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.wiley.com/bw/journal.asp?ref=0014-3820" + title="Evolution"> <img class="journal" + src="images/journal_files/image001.gif" alt="Evolution"/> </a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DEvolution" + title="Find records in TreeBASE for articles published in Evolution"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DEvolution + </a></p> + </td> + </tr> + <tr> + <td> + <p><a + href="http://www3.interscience.wiley.com/journal/119423602/home"> + <img class="journal" + src="images/journal_files/image002.jpg"> </a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Evolutionary+Applications%22" + title="Find records in TreeBASE for articles published in Evolutionary Applications"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Evolutionary+Applications%22 + </a></p> + </td> + </tr> + <tr> + <td> + <p><a + href="http://www.elsevier.com/wps/find/journaldescription.cws_home/720691/description#description"> + <img class="journal" + src="images/journal_files/image003.jpg" /></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Biology%22" + title="Find records in TreeBASE for articles published in Fungal Biology"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Biology%22 + </a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.publish.csiro.au/nid/120.htm"> + <img class="journal" + src="images/journal_files/image004.gif" + alt="Invertebrate Systematics" /> </a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Invertebrate+Systematics%22" + title="Find records in TreeBASE for articles published in Invertebrate Systematics"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Invertebrate+Systematics%22 + </a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.msafungi.org/"> <img class="journal" src="images/journal_files/image005.gif" + alt="Join MSA" /></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycologia" + title="Find records in TreeBASE for articles published in Mycologia"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycologia</a> + </p> + </td> + </tr> + <tr> + <td> + <p><a + href="http://www.springer.com/life+sciences/plant+sciences/journal/11557"> + <img class="journal" + src="images/journal_files/image006.jpg" alt="Get MycPro"/> </a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Progress%22" + title="Find records in TreeBASE for articles published in Mycologial Progress"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Progress%22</a> + </p> + </td> + </tr> + <tr> + <td> + <p><a + href="http://www.elsevier.com/wps/find/journaldescription.cws_home/707043/description#description"> + <img class="journal" + src="images/journal_files/image007.gif" alt="Join BMS"> + </a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Research%22" + title="Find records in TreeBASE for articles published in Mycologial Research"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Mycologial+Research%22</a></p> + </td> + </tr> + <tr> + <td> + <p><a + href="http://www.springer.com/life+sciences/microbiology/journal/10267"> + <img class="journal" + src="images/journal_files/image008.gif" alt=Mycoscience></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycoscience" + title="Find records in TreeBASE for articles published in Mycoscience"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycoscience</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.mycosphere.org/"><img class="journal" src="images/journal_files/image009.jpg"></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycosphere" + title="Find records in TreeBASE for articles published in Mycosphere"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMycosphere</a></p> + </td> + </tr> + <tr> + <td> + <p><a + href="http://www.elsevier.com/wps/find/journaldescription.cws_home/701789/description#description"> + <img class="journal" + src="images/journal_files/image010.gif" + alt="Organisms, Diversity, and Evolution"></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Organisms+Diversity+&+Evolution%22" + title="Find records in TreeBASE for articles published in Organisms Diversity & Evolution"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Organisms+Diversity+&+Evolution%22</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.persoonia.org/"><img class="journal" src="images/journal_files/image011.jpg"></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPersoonia" + title="Find records in TreeBASE for articles published in Persoonia"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPersoonia</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://apsjournals.apsnet.org/loi/phyto?cookieSet=1" + title=link> <img class="journal" + src="images/journal_files/image012.jpg" alt="Join APS"></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPhytopahology" + title="Find records in TreeBASE for articles published in Phytopahology"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DPhytopahology</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.apsnet.org/pd/"><img class="journal" src="images/journal_files/image013.jpg"></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Disease%22" + title="Find records in TreeBASE for articles published in Plant Disease"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Disease%22</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.rhodora.org/Rhodora.html"><img + class="journal" + src="images/journal_files/image014.gif" alt="Rhodora"></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DRhodora" + title="Find records in TreeBASE for articles published in Rhodora"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DRhodora</a></p> + </td> + </tr> + <tr> + <td> + <p><a + href="http://www.rbg.vic.gov.au/science/information-and-resources/science-publications/muelleria"> + <img class="journal" + src="images/journal_files/image015.jpg"></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMuelleria" + title="Find records in TreeBASE for articles published in Muelleria"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DMuelleria</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.studiesinmycology.org/"><img class="journal" src="images/journal_files/image016.gif" + alt="Studies in Mycology"></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Studies+in+Mycology%22" + title="Find records in TreeBASE for articles published in Studies in Mycology"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Studies+in+Mycology%22</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://systbiol.org/"><img class="journal" src="images/journal_files/image017.gif" alt="Join SSB"/> + </a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Biology%22" + title="Find records in TreeBASE for articles published in Systematic Biology"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Biology%22</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://www.sysbot.org/"><img class="journal" src="images/journal_files/image018.gif" + alt="Join ASPT"/></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Botany%22" + title="Find records in TreeBASE for articles published in Systematic Botany"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Systematic+Botany%22</a></p> + </td> + </tr> + <tr> + <td> + <p><a href="http://tropical-bryology.org/"><img class="journal" src="images/journal_files/image019.jpg"/></a></p> + </td> + <td> + <p><a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Tropical+Bryology%22" + title="Find records in TreeBASE for articles published in Tropical Bryology"> + http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Tropical+Bryology%22</a></p> + </td> + </tr> </table> -<p><b>Other Journals with a Significant Presence in TreeBASE</b>: -<a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%2American+Journal+of+Botany%22" -title="American Journal of Botany" id=gyux>American Journal of Botany</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Annals+of+the+Missouri+Botanical+Garden%22" -title="Annals of the Missouri Botanical Garden" id=upm6>Annals of the Missouri -Botanical Garden</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Biological+Journal+of+the+Linnean+Society%22" -title="Biological Journal of the Linnean Society" id=lhjm>Biological Journal of -the Linnean Society</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22BMC+Evolutionary+Biology%22" -title="BMC Evolutionary Biology" id=jug2>BMC Evolutionary Biology</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Canadian+Journal+of+Botany%22" -title="Canadian Journal of Botany" id=q0.s>Canadian Journal of Botany</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DCladistics" -title=Cladistics id=vl2m>Cladistics</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Diversity%22" -title="Fungal Diversity" id=eosa>Fungal Diversity</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22International+Journal+of+Plant+Sciences%22" -title="International Journal of Plant Sciences" id=ch9v>International Journal -of Plant Sciences</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Journal+of+Phycology%22" -title="Journal of Phycology" id=sm-n>Journal of Phycology</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Biology+and+Evolution%22" -title="Molecular Biology and Evolution" id=i256>Molecular Biology and Evolution</a>; -<a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Ecology%22" -title="Molecular Ecology" id="pxv_">Molecular Ecology</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Phylogenetics+and+Evolution%22" -title="Molecular Phylogenetics and Evolution" id="x2_7">Molecular Phylogenetics -and Evolution</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Systematics+and+Evolution%22" -title="Plant Systematics and Evolution" id=ms2.>Plant Systematics and Evolution</a>; -<a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Proceeding+of+the+National+Academy+of+Sciences+of+the+United+States+of+America%22" -title="Proceeding of the National Academy of Sciences of the United States of America" -id=qudx>Proceeding of the National Academy of Sciences of the United States of +<p><b>Other Journals with a Significant Presence in TreeBASE</b>: <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%2American+Journal+of+Botany%22" + title="American Journal of Botany">American Journal of Botany</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Annals+of+the+Missouri+Botanical+Garden%22" + title="Annals of the Missouri Botanical Garden">Annals of the +Missouri Botanical Garden</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Biological+Journal+of+the+Linnean+Society%22" + title="Biological Journal of the Linnean Society">Biological +Journal of the Linnean Society</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22BMC+Evolutionary+Biology%22" + title="BMC Evolutionary Biology">BMC Evolutionary Biology</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Canadian+Journal+of+Botany%22" + title="Canadian Journal of Botany">Canadian Journal of Botany</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DCladistics" + title="Cladistics">Cladistics</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Fungal+Diversity%22" + title="Fungal Diversity">Fungal Diversity</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22International+Journal+of+Plant+Sciences%22" + title="International Journal of Plant Sciences">International +Journal of Plant Sciences</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Journal+of+Phycology%22" + title="Journal of Phycology">Journal of Phycology</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Biology+and+Evolution%22" + title="Molecular Biology and Evolution">Molecular Biology and +Evolution</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Ecology%22" + title="Molecular Ecology">Molecular Ecology</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Molecular+Phylogenetics+and+Evolution%22" + title="Molecular Phylogenetics and Evolution">Molecular +Phylogenetics and Evolution</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Plant+Systematics+and+Evolution%22" + title="Plant Systematics and Evolution">Plant Systematics and +Evolution</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Proceeding+of+the+National+Academy+of+Sciences+of+the+United+States+of+America%22" + title="Proceeding of the National Academy of Sciences of the United States of America"> +Proceeding of the National Academy of Sciences of the United States of America</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Proceedings+of+the+Royal+Society+B%22" -title="Proceedings of the Royal Society B" id=nphn>Proceedings of the Royal + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3D%22Proceedings+of+the+Royal+Society+B%22" + title="Proceedings of the Royal Society B">Proceedings of the Royal Society B</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DTaxon" -title=Taxon id=vc5e>Taxon</a>; <a -href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DZootaxa" -title=Zootaxa id=b4cg>Zootaxa</a></p> + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DTaxon" + title="Taxon">Taxon</a>; <a + href="http://purl.org/phylo/treebase/phylows/study/find?query=prism.publicationName%3D%3DZootaxa" + title="Zootaxa">Zootaxa</a></p> +</div> </div> \ No newline at end of file Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/partnership.jsp =================================================================== --- trunk/treebase-web/src/main/webapp/WEB-INF/pages/partnership.jsp 2010-03-20 23:04:58 UTC (rev 640) +++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/partnership.jsp 2010-03-21 11:40:26 UTC (rev 641) @@ -1,56 +1,59 @@ -<div class=Section1> - -<h1>Partnerships</h1> - -<p> </p> - -<p><img width=160 height=100 -src="images/nescent_logo.jpg" style='height:100px;width:160px'> The -<a href="http://www.nescent.org" -title="National Evolutionary Synthesis Center (NESCent)" id=qhvf>National -Evolutionary Synthesis Center (NESCent)</a> is a national center sponsored by -NSF with the mission of facilitating synthetic research in evolutionary -biology. Through a partnership with CIPRES and TreeBASE, NESCent is serving to -deploy, maintain, and host TreeBASE.</p> - -<p style='margin-bottom:12.0pt'> </p> - -<p><br> -<img border=0 width=160 height=100 src="images/partnership/image002.jpg" -style='height:100px;width:160px'><span style='font-size:10.0pt'><a -href="http://www.datadryad.org" title=Dryad id=hqpf>Dryad</a> is a open -digital repository of author-submitted published data which supports many -journals in evolutionary biology and ecology. Metadata in TreeBASE is -being harvested and mirrored by Dryad using the TreeBASE OAI-PMH service. -Metadata for existing TreeBASE records is being enriched through manual and -semi-automated mechanisms. Dryad is also forwarding phylogenetic data -depositions to TreeBASE at the request of the author. These activities are -funded by NSF DBI 0743720: "A Digital Repository for Preservation and -Sharing of Data Underlying Published Works in Evolutionary Biology."</span></p> - -<p style='margin-bottom:12.0pt'> </p> - -<p><img border=0 width=160 height=100 -src="images/partnership/image003.jpg" style='height:100px;width:160px'><span -style='font-size:10.0pt'>TreeBASE currently makes use of <a -href="http://www.ubio.org/index.php?pagename=services_overview" -title="uBio's taxonomic name services" id=k03k>uBio's taxonomic name services</a> -to match taxon labels in submitted trees and matrices against uBio's dictionary -of nomenclature. TreeBASE further uses this mapping to acquire and store <a -href="http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=howlink" -title="NCBI taxids" id=jh1k>NCBI taxids</a>. In prior years, TreeBASE has -provided a bulk list of its taxonomy to uBio in order to store links to -TreeBASE, and there are plans to automate this procedure in the future. </span></p> - -<p style='margin-bottom:12.0pt'><br> -<br> -</p> - -<p><img border=0 width=160 height=100 -src="images/partnership/image004.jpg" style='height:100px;width:160px'>Many -thanks to the National Science Foundation for their valuable support.</p> - -<p> </p> - +<div id="contentRight"> + <div class="gutter"> + <h1>Partnerships</h1> + <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px"> + <img + width="160" + src="images/nescent_logo.jpg" + style="display:inline;float:left;margin-right:15px"/>The + <a + href="http://www.nescent.org" + title="National Evolutionary Synthesis Center (NESCent)">National + Evolutionary Synthesis Center (NESCent) + </a> is a national center sponsored by NSF with the mission of facilitating + synthetic research in evolutionary biology. Through a partnership with CIPRES + and TreeBASE, NESCent is serving to deploy, maintain, and host TreeBASE. + </p> + <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px"> + <img + width="160" + height="100" + src="images/partnership/image002.jpg" + style="display:inline;float:left;margin-right:15px"/> + <a + href="http://www.datadryad.org" + title="Dryad">Dryad</a> is an open digital repository of author-submitted + published data which supports many journals in evolutionary biology and ecology. + Metadata in TreeBASE is being harvested and mirrored by Dryad using the TreeBASE + OAI-PMH service. Metadata for existing TreeBASE records is being enriched through + manual and semi-automated mechanisms. Dryad is also forwarding phylogenetic data + depositions to TreeBASE at the request of the author. These activities are + funded by NSF DBI 0743720: "A Digital Repository for Preservation and + Sharing of Data Underlying Published Works in Evolutionary Biology." + </p> + <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px"> + <img + width="160" + height="100" + src="images/partnership/image003.jpg" + style="display:inline;float:left;margin-right:15px"/> + TreeBASE currently makes use of <a + href="http://www.ubio.org/index.php?pagename=services_overview" + title="uBio's taxonomic name services">uBio's taxonomic name services</a> + to match taxon labels in submitted trees and matrices against uBio's dictionary + of nomenclature. TreeBASE further uses this mapping to acquire and store <a + href="http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi?chapter=howlink" + title="NCBI taxids">NCBI taxids</a>. In prior years, TreeBASE has provided a bulk list + of its taxonomy to uBio in order to store links to TreeBASE, and there are plans to + automate this procedure in the future. + </p> + <p style="clear:both;border-top: 1px solid #3d649f;padding-top:15px"> + <img + width="160" + height="100" + src="images/partnership/image004.jpg" + style="display:inline;float:left;margin-right:15px"/>Many thanks to the National Science Foundation + for their valuable support. + </p> + </div> </div> - Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/reference.jsp =================================================================== --- trunk/treebase-web/src/main/webapp/WEB-INF/pages/reference.jsp 2010-03-20 23:04:58 UTC (rev 640) +++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/reference.jsp 2010-03-21 11:40:26 UTC (rev 641) @@ -1,5 +1,6 @@ - -<h1>References</h1> +<div id="contentRight"> + <div class="gutter"> + <h1>References</h1> <p> <strong>Blake, J. A., C. J. Bult, M. J. Donoghue, J. Humphries, and C. Fields.</strong> 1994. Interoperability of biological databases: a meeting report. @@ -82,4 +83,6 @@ <strong>Wang, J. T. L., H. Shan, D. Shasha and W. H. Piel.</strong> 2005. Fast Structural Search in Phylogenetic Databases <em>. Evolutionary Bioinformatics Online</em>, <strong>1</strong>: 37-46. - </p> \ No newline at end of file + </p> + </div> +</div> \ No newline at end of file Modified: trunk/treebase-web/src/main/webapp/styles/styles.css =================================================================== --- trunk/treebase-web/src/main/webapp/styles/styles.css 2010-03-20 23:04:58 UTC (rev 640) +++ trunk/treebase-web/src/main/webapp/styles/styles.css 2010-03-21 11:40:26 UTC (rev 641) @@ -300,6 +300,16 @@ padding-bottom: 20px } +/* Journal page +*******************************************************************************************/ + +img.journal { + width: 121px; + height: 40px; + border: 0; + align: bottom +} + /* Left Sidebar Navigation Menu *******************************************************************************************/ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |