[Treebase-guts] SF.net SVN: treebase:[637] trunk/treebase-web/src/main/webapp/WEB-INF/pages /urlAPI.jsp

[<hl...@us...>]

Revision: 637
          http://treebase.svn.sourceforge.net/treebase/?rev=637&view=rev
Author:   hlapp
Date:     2010-03-20 18:28:42 +0000 (Sat, 20 Mar 2010)

Log Message:
-----------
Remove excessive whitespace and make markup at least a little bit constistent.

Modified Paths:
--------------
    trunk/treebase-web/src/main/webapp/WEB-INF/pages/urlAPI.jsp

Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/urlAPI.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/urlAPI.jsp	2010-03-20 18:16:27 UTC (rev 636)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/urlAPI.jsp	2010-03-20 18:28:42 UTC (rev 637)
@@ -1,31 +1,14 @@
 <div id="contentRight">
 	<div class="gutter">
 		<h1>Data Access</h1>
-		
 
 <p><b>Web Browser User Interface</b></p>
 
-<p>&nbsp;</p>
+<p>Primary access to the database is through its web interface, where users most commonly search on authors, citations, and taxa. Datasets are downloadable in NEXUS and NeXML formats for further analysis.</p>
 
-<p><span>Primary access to the
-database is through its web interface, where users most commonly search on
-authors, citations, and taxa. Datasets are downloadable in NEXUS and NeXML
-formats for further analysis.</span></p>
-
-<p>&nbsp;</p>
-
-<p><span>TreeBASE can be
-accessed programmatically through a stateless web service interface and URL
-architecture.</span>&nbsp; This interface can deliver data in several different
-formats, including NEWICK, NEXUS, JSON, NeXML.</p>
-
-<p>&nbsp;</p>
-
 <p><b>Programmatic Data Access</b></p>
 
-<p>In addition to the web interface, there are several forms of
-programmatic access to the contents:</p>
-
+<p>In addition to the web interface, TreeBASE can be accessed programmatically through a stateless web service interface and URL architecture. This interface can deliver data in several different formats, including NEWICK, NEXUS, JSON, NeXML.</p>
 <ul type=disc>
  <li>a&nbsp;<a href="http://evoinfo.nescent.org/PhyloWS"
      title=PhyloWS id=fp8u>PhyloWS</a>&nbsp;RESTful API. A detailed description
@@ -38,78 +21,61 @@
  <li>SQL data dumps, coming soon.</li>
 </ul>
 
-<p>&nbsp;</p>
-
 <p><i><u>Links to external objects</u></i></p>
 
-<p><br>
-<span>TreeBASE stores references to and provides
+<p>TreeBASE stores references to and provides
 outlinks to external objects including DOIs (for publications), NameBankIDs and
-NCBI taxids (for taxa), and Genbank accession numbers (for sequences).&nbsp;</span><br>
-<br>
-<i><u>Links to objects within TreeBASE</u></i><br>
-<br>
-TreeBASE issues persistent and resolvable uniform resource identifiers (URIs)
+NCBI taxids (for taxa), and Genbank accession numbers (for sequences).&nbsp;</p>
+
+<p><i><u>Links to objects within TreeBASE</u></i></p>
+
+<p>TreeBASE issues persistent and resolvable uniform resource identifiers (URIs)
 to studies, matrices, trees, and nodes in trees.&nbsp; These allow external
 data services to link directly into TreeBASE resources. For example:&nbsp;</p>
 
-<p>&nbsp;</p>
-
 <table border=0 cellspacing=0 cellpadding=0 width=600
  style='width:5.0in' id=ua52>
  <tr>
   <td width=100 style='width:60.0pt;padding:1.8pt 1.8pt 1.8pt 1.8pt'>
-  <p>URI to a study:</p>
+  URI to a study:
   </td>
   <td width="50%" style='width:50.0%;padding:1.8pt 1.8pt 1.8pt 1.8pt'>
-  <p>http://purl.org/phylo/treebase/phylows/study/TB2:S1925</p>
+  http://purl.org/phylo/treebase/phylows/study/TB2:S1925
   </td>
  </tr>
  <tr>
   <td width=100 style='width:60.0pt;padding:1.8pt 1.8pt 1.8pt 1.8pt'>
-  <p>URI to a matrix:</p>
+  URI to a matrix:
   </td>
   <td width="50%" style='width:50.0%;padding:1.8pt 1.8pt 1.8pt 1.8pt'>
-  <p>http://purl.org/phylo/treebase/phylows/matrix/TB2:M2610</p>
+  http://purl.org/phylo/treebase/phylows/matrix/TB2:M2610
   </td>
  </tr>
  <tr>
   <td width=100 style='width:60.0pt;padding:1.8pt 1.8pt 1.8pt 1.8pt'>
-  <p>URI to a tree:</p>
+  URI to a tree:
   </td>
   <td width="50%" style='width:50.0%;padding:1.8pt 1.8pt 1.8pt 1.8pt'>
-  <p>http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2026</p>
+  http://purl.org/phylo/treebase/phylows/tree/TB2:Tr2026
   </td>
  </tr>
 </table>
 
-<p>&nbsp;</p>
-
 <p><b>RSS Feeds</b></p>
 
-<p style='margin-bottom:12.0pt'><br>
-<span>When TreeBASE's API delivers a list of results
+<p>When TreeBASE's API delivers a list of results
 in RDF/XML, it typically expresses this in RSS 1.0. This delivery allows
 programmatic capture of these results as well as human perusal using a RSS
 client reader or browser. For example, a user interested in a certain taxon
 could express a query as a PhyloWS URL and enter it into his or her favorite
 RSS reader. As a result, any new submissions to TreeBASE that includes this
-taxon of interest will alert the user with a new RSS article.&nbsp;</span></p>
+taxon of interest will alert the user with a new RSS article.&nbsp;</p>
 
 <p><b>Data Dumps</b></p>
 
-<p>&nbsp;</p>
-
 <p>In the future, users who wish to perform queries and
 analyses beyond the scope and performance of TreeBASE will be able to acquire
-entire periodic data dumps that comply<span style='background:white'> with a
-standard data model, such as BioSQL.</span></p>
+entire periodic data dumps that comply with a
+standard data model, such as BioSQL.</p>
 
-<p>&nbsp;</p>
-
-
-
-
-
-	</div>
-</div>
\ No newline at end of file
+</div></div>
\ No newline at end of file


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