[Treebase-guts] SF.net SVN: treebase:[598] trunk/treebase-core/src/main/java/org/cipres/ treebase/domain/taxon/Taxon.java

[<rv...@us...>]

Revision: 598
          http://treebase.svn.sourceforge.net/treebase/?rev=598&view=rev
Author:   rvos
Date:     2010-03-16 16:47:24 +0000 (Tue, 16 Mar 2010)

Log Message:
-----------
Added getAnnotations() method, which returns skos: predicates to link to ubio and ncbi.

Modified Paths:
--------------
    trunk/treebase-core/src/main/java/org/cipres/treebase/domain/taxon/Taxon.java

Modified: trunk/treebase-core/src/main/java/org/cipres/treebase/domain/taxon/Taxon.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/domain/taxon/Taxon.java	2010-03-16 16:46:12 UTC (rev 597)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/domain/taxon/Taxon.java	2010-03-16 16:47:24 UTC (rev 598)
@@ -5,6 +5,7 @@
 
 import java.util.ArrayList;
 import java.util.Collection;
+import java.util.List;
 
 import javax.persistence.AttributeOverride;
 import javax.persistence.CascadeType;
@@ -20,7 +21,9 @@
 import org.hibernate.annotations.CacheConcurrencyStrategy;
 import org.hibernate.annotations.Index;
 
+import org.cipres.treebase.Constants;
 import org.cipres.treebase.domain.AbstractPersistedObject;
+import org.cipres.treebase.domain.Annotation;
 import org.cipres.treebase.domain.TBPersistable;
 
 /**
@@ -245,5 +248,23 @@
 	public String getLabel() {
 		return getName();
 	}
+	
+	@Transient
+	public List<Annotation> getAnnotations() {
+		List<Annotation> annotations = super.getAnnotations();
+		try {
+			if ( null != getNcbiTaxId() ) {
+				annotations.add(new Annotation(Constants.SKOSURI,"skos:exactMatch",Constants.NCBITaxonomyBase + getNcbiTaxId()));
+				annotations.add(new Annotation(Constants.TBTermsURI, "tb:identifier.ncbi", getNcbiTaxId()));				
+			}
+			if ( null != getUBioNamebankId() ) {
+				annotations.add(new Annotation(Constants.SKOSURI,"skos:exactMatch",Constants.uBioBase + getUBioNamebankId()));
+				annotations.add(new Annotation(Constants.TBTermsURI, "tb:identifier.ubio", getUBioNamebankId()));				
+			}
+		} catch ( Exception e ) {
+			e.printStackTrace();
+		}
+		return annotations;
+	}	
 
 }


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