Re: [Treebase-devel] Final migration increment

[William P. <wil...@ya...>]

On Mar 12, 2010, at 4:30 PM, Vladimir Gapeyev wrote:

> 
> On Mar 12, 2010, at 2:37 PM, William Piel wrote:
> 
>> 
>> The final taxon intel tables are now available.
>> 
>> http://www.treebase.org/treebase/migration/Mar-10/ 
>> TI_for_Mar10_utf8.zip
> 
> They are now in the treebasestage instance.
> --VG

Thanks. 

This last mapping effort worked for older data, but not the March migration data -- perhaps taxon label records are missing in this migration? 

For example, one newly-migrated dataset has the following tb2 IDs:

study id = S10294
matrix id = M4906
tree id = Tr6769

Yet, click the taxon tab from any of these objects and you get zero records. i.e., there's no mapping between taxon labels and taxa and/or all the taxon labels are missing. The actual files have, for example, the taxon label "Agaricus bisporus" which perfectly maps to a taxon record of the exactly the same string. 

My guess is that this data-bug with the March migration is related to the fact that we're unable to download trees (you and I discussed this problem earlier this week).

bp