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[Treebase-guts] SF.net SVN: treebase:[458] trunk/treebase-web/src/main/webapp/WEB-INF/pages /search/study/nav.jsp
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From: <rv...@us...> - 2010-01-15 16:48:17
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Revision: 458
http://treebase.svn.sourceforge.net/treebase/?rev=458&view=rev
Author: rvos
Date: 2010-01-15 16:48:09 +0000 (Fri, 15 Jan 2010)
Log Message:
-----------
Changed agreement to floating div instead of javascript confirm dialog.
Modified Paths:
--------------
trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/study/nav.jsp
Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/study/nav.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/study/nav.jsp 2010-01-15 16:04:17 UTC (rev 457)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/study/nav.jsp 2010-01-15 16:48:09 UTC (rev 458)
@@ -186,59 +186,64 @@
<span style="color: red; ">You are in reviewer mode.</span>
</div>
<c:if test="${displayAgreement}">
- <script type="text/javascript">
- TreeBASE.register(
- function() {
- var msg = "Reviewer/Referee Access Agreement\n"
- + "\n"
- + "You have reached this page using a special URL that is intended to be used\n"
- + "by journal editors and reviewers or referees of a paper that is under\n"
- + "consideration for publication. This URL gives you access to the submitted\n"
- + "data and metadata associated with analyses and results presented in the\n"
- + "paper under review. Please carefully examine the data paying special\n"
- + "attention to the following:\n"
- + "\n"
- + "* The citation data (authors, year, citation, abstract) should be\n"
- + " complete, except for information that is not yet known (e.g. volume or\n"
- + " page numbers).\n"
- + "* Verify that nexus files are error-free and executable by software\n"
- + " programs (e.g. PAUP, Mesquite, MacClade, etc). Please make sure that the\n"
- + " taxon labels for trees are identical, or a subset of, the taxon labels in\n"
- + " data matrices connected by way of an analysis. If taxon labels in trees do\n"
- + " not match with taxon labels in associated data matrices, the data will not\n"
- + " be useful to the scientific community.\n"
- + "* Verify that data are not missing and that opportunities to supply\n"
- + " valuable metadata are not overlooked. For example, TreeBASE can store\n"
- + " Genbank accession numbers, museum voucher IDs, latitude and longitudes for\n"
- + " specimen localities, character names and character state names for\n"
- + " morphological data, etc. Including these metadata are sometimes overlooked\n"
- + " by submitting authors, yet sharing this metadata is extremely valuable to\n"
- + " the scientific community. Please use your power as a reviewer to encourage\n"
- + " the sharing of richly-annotated metadata.\n"
- + "* Verify that analyses are not missing and that, where possible, analysis\n"
- + " entries include software commands (e.g. the contents of a PAUP block or\n"
- + " MrBayes block) so that analyses can be replicated easily (e.g. commands\n"
- + " that describe substitution models, data partitions, and heuristic search\n"
- + " parameters).\n"
- + "* Verify that taxon labels are mapped against TreeBASE's taxonomic\n"
- + " dictionary. Data in TreeBASE can only be found using a taxon name search if\n"
- + " the taxon labels are properly mapped.\n"
- + "\n"
- + "By clicking the 'OK' button below, you agree to keep these data\n"
- + "confidential; you agree not to retain these data after completing your report\n"
- + "to the journal editor; you agree not to use these data or knowledge of these\n"
- + "data for the purposes of your research until and unless the paper under\n"
- + "review has been published and the data have been made available to the\n"
- + "general public; you agree to keep the URL confidential.\n";
- if ( confirm(msg) ) {
- // do things if OK
- }
- else {
- history.back(1);
- }
- }
- );
- </script>
+ <div id="agreement" style="position:fixed;left:10%;top:5%;width:80%;height:80%;background-color:white;padding:10px;border:5px solid orange">
+ <h2>Reviewer/Referee Access Agreement</h2>
+ <div style="width:100%;overflow:auto">
+ You have reached this page using a special URL that is intended to be used
+ by journal editors and reviewers or referees of a paper that is under
+ consideration for publication. This URL gives you access to the submitted
+ data and metadata associated with analyses and results presented in the
+ paper under review. Please carefully examine the data paying special
+ attention to the following:
+ <ul>
+ <li>
+ The citation data (authors, year, citation, abstract) should be
+ complete, except for information that is not yet known (e.g. volume or
+ page numbers).
+ </li>
+ <li>
+ Verify that nexus files are error-free and executable by software
+ programs (e.g. PAUP, Mesquite, MacClade, etc). Please make sure that the
+ taxon labels for trees are identical, or a subset of, the taxon labels in
+ data matrices connected by way of an analysis. If taxon labels in trees do
+ not match with taxon labels in associated data matrices, the data will not
+ be useful to the scientific community.
+ </li>
+ <li>
+ Verify that data are not missing and that opportunities to supply
+ valuable metadata are not overlooked. For example, TreeBASE can store
+ Genbank accession numbers, museum voucher IDs, latitude and longitudes for
+ specimen localities, character names and character state names for
+ morphological data, etc. Including these metadata are sometimes overlooked
+ by submitting authors, yet sharing this metadata is extremely valuable to
+ the scientific community. Please use your power as a reviewer to encourage
+ the sharing of richly-annotated metadata.
+ </li>
+ <li>
+ Verify that analyses are not missing and that, where possible, analysis
+ entries include software commands (e.g. the contents of a PAUP block or
+ MrBayes block) so that analyses can be replicated easily (e.g. commands
+ that describe substitution models, data partitions, and heuristic search
+ parameters).
+ </li>
+ <li>
+ Verify that taxon labels are mapped against TreeBASE's taxonomic
+ dictionary. Data in TreeBASE can only be found using a taxon name search if
+ the taxon labels are properly mapped.
+ </li>
+ </ul>
+ By clicking the 'OK' button below, you agree to keep these data
+ confidential; you agree not to retain these data after completing your report
+ to the journal editor; you agree not to use these data or knowledge of these
+ data for the purposes of your research until and unless the paper under
+ review has been published and the data have been made available to the
+ general public; you agree to keep the URL confidential.
+ </div>
+ <div style="width:100%;text-align:center;padding-top:10px">
+ <input type="submit" id="agreementOk" value="OK" onclick="$('agreement').style.display = 'none'"/>
+ <input type="submit" id="agreementCancel" value="Cancel" onclick="history.back(1)"/>
+ </div>
+ </div>
</c:if>
</c:if>
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