[Treebase-guts] SF.net SVN: treebase:[455] trunk/treebase-web/src/main/webapp/WEB-INF/pages /search/study/nav.jsp

[<rv...@us...>]

Revision: 455
          http://treebase.svn.sourceforge.net/treebase/?rev=455&view=rev
Author:   rvos
Date:     2010-01-15 15:55:17 +0000 (Fri, 15 Jan 2010)

Log Message:
-----------
Added reviewer agreement.

Modified Paths:
--------------
    trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/study/nav.jsp

Modified: trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/study/nav.jsp
===================================================================
--- trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/study/nav.jsp	2010-01-15 15:23:47 UTC (rev 454)
+++ trunk/treebase-web/src/main/webapp/WEB-INF/pages/search/study/nav.jsp	2010-01-15 15:55:17 UTC (rev 455)
@@ -183,8 +183,59 @@
 <c:if test="${reviewerAccessGranted}">
   	<div>
   		<img src="<fmt:message key="icons.info"/>" alt="<fmt:message key="icon.information"/>" class="icon" />
-		<span style="color: red; ">You are in reviewer mode ${displayAgreement}.</span>
+		<span style="color: red; ">You are in reviewer mode.</span>
 	</div>
+	<c:if test="${displayAgreement}">
+		<script type="text/javascript">
+var msg = "Reviewer/Referee Access Agreement\n"
++ "\n"
++ "You have reached this page using a special URL that is intended to be used\n"
++ "by journal editors and reviewers or referees of a paper that is under\n"
++ "consideration for publication. This URL gives you access to the submitted\n"
++ "data and metadata associated with analyses and results presented in the\n"
++ "paper under review. Please carefully examine the data paying special\n"
++ "attention to the following:\n"
++ "\n"
++ "* The citation data (authors, year, citation, abstract) should be\n"
++ "  complete, except for information that is not yet known (e.g. volume or\n"
++ "  page numbers).\n"
++ "* Verify that nexus files are error-free and executable by software\n"
++ "  programs (e.g. PAUP, Mesquite, MacClade, etc). Please make sure that the\n"
++ "  taxon labels for trees are identical, or a subset of, the taxon labels in\n"
++ "  data matrices connected by way of an analysis. If taxon labels in trees do\n"
++ "  not match with taxon labels in associated data matrices, the data will not\n"
++ "  be useful to the scientific community.\n"
++ "* Verify that data are not missing and that opportunities to supply\n"
++ "  valuable metadata are not overlooked. For example, TreeBASE can store\n"
++ "  Genbank accession numbers, museum voucher IDs, latitude and longitudes for\n"
++ "  specimen localities, character names and character state names for\n"
++ "  morphological data, etc. Including these metadata are sometimes overlooked\n"
++ "  by submitting authors, yet sharing this metadata is extremely valuable to\n"
++ "  the scientific community. Please use your power as a reviewer to encourage\n"
++ "  the sharing of richly-annotated metadata.\n"
++ "* Verify that analyses are not missing and that, where possible, analysis\n"
++ "  entries include software commands (e.g. the contents of a PAUP block or\n"
++ "  MrBayes block) so that analyses can be replicated easily (e.g. commands\n"
++ "  that describe substitution models, data partitions, and heuristic search\n"
++ "  parameters).\n"
++ "* Verify that taxon labels are mapped against TreeBASE's taxonomic\n"
++ "  dictionary. Data in TreeBASE can only be found using a taxon name search if\n"
++ "  the taxon labels are properly mapped.\n"
++ "\n"
++ "By clicking the 'OK' button below, you agree to keep these data\n"
++ "confidential; you agree not to retain these data after completing your report\n"
++ "to the journal editor; you agree not to use these data or knowledge of these\n"
++ "data for the purposes of your research until and unless the paper under\n"
++ "review has been published and the data have been made available to the\n"
++ "general public; you agree to keep the URL confidential.\n";
+			if (confirm(msg) { 
+				 // do things if OK
+			}
+			else {
+				history.back(1);
+			}						
+		</script>
+	</c:if>
 </c:if>
 
 <c:if test="${! empty study.citation.title}">


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