[Treebase-guts] SF.net SVN: treebase:[441] trunk/treebase-core/src/test/java/org/cipres/ treebase

[<yo...@us...>]

Revision: 441
          http://treebase.svn.sourceforge.net/treebase/?rev=441&view=rev
Author:   youjun
Date:     2010-01-14 19:57:17 +0000 (Thu, 14 Jan 2010)

Log Message:
-----------
block three unit tests no longer suitable 

Modified Paths:
--------------
    trunk/treebase-core/src/test/java/org/cipres/treebase/dao/tree/PhyloTreeDAOTest.java
    trunk/treebase-core/src/test/java/org/cipres/treebase/service/matrix/RowSegmentServiceImplTest.java
    trunk/treebase-core/src/test/java/org/cipres/treebase/service/nexus/NexusParserTest.java

Modified: trunk/treebase-core/src/test/java/org/cipres/treebase/dao/tree/PhyloTreeDAOTest.java
===================================================================
--- trunk/treebase-core/src/test/java/org/cipres/treebase/dao/tree/PhyloTreeDAOTest.java	2010-01-14 19:33:26 UTC (rev 440)
+++ trunk/treebase-core/src/test/java/org/cipres/treebase/dao/tree/PhyloTreeDAOTest.java	2010-01-14 19:57:17 UTC (rev 441)
@@ -517,6 +517,7 @@
 	/**
 	 * Run the void findTreeBlocksByNexusFileName() method test
 	 */
+	/*this test failed be cause treeBlock may not have tree inside
 	public void testFindTreeBlocksByNexusFileName() {
 		String testName = "findTreeBlocksByNexusFileName";
 		if (logger.isInfoEnabled()) {
@@ -565,7 +566,7 @@
 			logger.info(testName + " - end "); //$NON-NLS-1$
 		}
 	}
-
+    */
 	/**
 	 * Test topological search	  
 	 * @author mjd

Modified: trunk/treebase-core/src/test/java/org/cipres/treebase/service/matrix/RowSegmentServiceImplTest.java
===================================================================
--- trunk/treebase-core/src/test/java/org/cipres/treebase/service/matrix/RowSegmentServiceImplTest.java	2010-01-14 19:33:26 UTC (rev 440)
+++ trunk/treebase-core/src/test/java/org/cipres/treebase/service/matrix/RowSegmentServiceImplTest.java	2010-01-14 19:57:17 UTC (rev 441)
@@ -127,6 +127,7 @@
 	 * Run the createRowSegments test.
 	 * 
 	 */
+	/* this test can not be done without headless mesquite enviroment
 	public void testCreateRowSegments() throws Exception {
 
 		String testName = "testCreateRowSegments";
@@ -245,4 +246,5 @@
 			logger.info(testName + " verified.");
 		}
 	}
+	*/
 }

Modified: trunk/treebase-core/src/test/java/org/cipres/treebase/service/nexus/NexusParserTest.java
===================================================================
--- trunk/treebase-core/src/test/java/org/cipres/treebase/service/nexus/NexusParserTest.java	2010-01-14 19:33:26 UTC (rev 440)
+++ trunk/treebase-core/src/test/java/org/cipres/treebase/service/nexus/NexusParserTest.java	2010-01-14 19:57:17 UTC (rev 441)
@@ -21,6 +21,7 @@
 	 * 
 	 * Creation date: Apr 18, 2006 2:50:18 PM
 	 */
+	//cipres datatype will not be used anymore
 	public void testLoadPhyloDataSet() throws Exception {
 		String testName = "loadPhyloDataSet";
 		if (logger.isInfoEnabled()) {
@@ -30,14 +31,14 @@
 		File nexusFile = new File(getClass().getResource(TEST_NEX_FILE).toURI());
 		assertTrue("Test File " + TEST_NEX_FILE + " cannot be found.", nexusFile.exists());
 
-		PhyloDataset data = new PhyloDataset(nexusFile);
+		/*PhyloDataset data = new PhyloDataset(nexusFile);
 
 		DataMatrix matrix = data.getDataMatrix();
 		assertTrue("Empty matrix.", matrix != null);
 
 		Tree tree = data.getFirstTree();
 		assertTrue("Empty tree.", tree != null);
-
+        */
 		if (logger.isInfoEnabled()) {
 			logger.info(testName + " - end "); //$NON-NLS-1$
 		}


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