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Re: [Treebase-devel] Deploying under Tomcat
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From: youjun g. <you...@ya...> - 2009-12-16 14:02:49
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Never mind, I was confused about what Vladimir want to do. Accurately eclipse offer so many ways to integrity a testing purpose Tomcat. As long as one can build the war file, the deployment and testing is just one button away. Youjun On Wed, Dec 16, 2009 at 5:07 AM, Rutger Vos <rut...@gm...> wrote: > I agree that it's useful to have a local web application inside a > local tomcat, and it shouldn't be too hard to get that up and running > beyond the point where you are now. I am aware of the mesquite.lib.* > issues and have just sent out an email discussing this on the > "Mesquite troubles" thread. > > On Wed, Dec 16, 2009 at 4:23 AM, Hilmar Lapp <hl...@ne...> wrote: > > Youjun - I don't know whether by TreeBASE installation you mean the > database > > or the web-application or both. I think it's pretty critical that every > > developer can bring up a local version of the web-application. They may > all > > be accessing the same database, but if everyone is updating and > redeploying > > on the same application server for every change or debugging run then > chaos > > of the unproductive kind will ensue quickly. > > -hilmar > > On Dec 15, 2009, at 11:17 PM, youjun guo wrote: > > > > Vladimir, > > > > Why do you want to deploy a new TreeBASE installation? If you just want > to > > add a java encrypt implementation like MD5 to TreeBASE code, I my be able > to > > help with it. Then you can focus on some other task. > > > > Youjun > > > > On Tue, Dec 15, 2009 at 5:50 PM, Vladimir Gapeyev <vga...@ne...> > > wrote: > >> > >> On Dec 15, 2009, at 4:41 PM, youjun guo wrote: > >> > >>> Vladimir, > >>> > >>> jdbc.properties should be add to main/resource of treebase-core before > >>> bilud, and it will be built into treebase-core jar file. > >>> > >> > >> Thanks, this has moved me forward. The deployment still fails, > apparently > >> due to mesquite again. See the excerpt from logs/catalina.out below. > >> > >> I do see numerous Eclipse complaints about failing 'import > >> mesquite.lib.*'., which I did not see earlier in the day! I did update > from > >> SVN, as well as all Maven-related update commands I could see in the UI. > >> > >> --Vladimir > >> > >> > >> > >> [main] ERROR org.springframework.web.context.ContextLoader - Context > >> initialization failed > >> org.springframework.beans.factory.BeanCreationException: Error creating > >> bean with name 'sessionFactory' defined in URL > >> > [jar:file:/Users/vgapeyev/Work/TreeBase/devel/applications/apache-tomcat-5.5.28/webapps/treebase-web/WEB-INF/lib/treebase-core-1.0-SNAPSHOT.jar!/applicationContext-dao.xml]: > >> Invocation of init method failed; nested exception is > >> org.hibernate.InstantiationException: could not instantiate test > >> objectorg.cipres.treebase.domain.taxon.TaxonLabelSet > >> Caused by: > >> org.hibernate.InstantiationException: could not instantiate test > >> objectorg.cipres.treebase.domain.taxon.TaxonLabelSet > >> at > >> > org.hibernate.engine.UnsavedValueFactory.instantiate(UnsavedValueFactory.java:25) > >> at > >> > org.hibernate.engine.UnsavedValueFactory.getUnsavedIdentifierValue(UnsavedValueFactory.java:44) > >> at > >> > org.hibernate.tuple.PropertyFactory.buildIdentifierProperty(PropertyFactory.java:44) > >> at > >> > org.hibernate.tuple.entity.EntityMetamodel.<init>(EntityMetamodel.java:124) > >> at > >> > org.hibernate.persister.entity.AbstractEntityPersister.<init>(AbstractEntityPersister.java:434) > >> at > >> > org.hibernate.persister.entity.SingleTableEntityPersister.<init>(SingleTableEntityPersister.java:109) > >> at > >> > org.hibernate.persister.PersisterFactory.createClassPersister(PersisterFactory.java:55) > >> at > >> > org.hibernate.impl.SessionFactoryImpl.<init>(SessionFactoryImpl.java:226) > >> at > >> > org.hibernate.cfg.Configuration.buildSessionFactory(Configuration.java:1300) > >> at > >> > org.hibernate.cfg.AnnotationConfiguration.buildSessionFactory(AnnotationConfiguration.java:859) > >> at > >> > org.springframework.orm.hibernate3.LocalSessionFactoryBean.newSessionFactory(LocalSessionFactoryBean.java:805) > >> at > >> > org.springframework.orm.hibernate3.LocalSessionFactoryBean.buildSessionFactory(LocalSessionFactoryBean.java:745) > >> at > >> > org.springframework.orm.hibernate3.AbstractSessionFactoryBean.afterPropertiesSet(AbstractSessionFactoryBean.java:134) > >> at > >> > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1198) > >> at > >> > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1167) > >> at > >> > org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:427) > >> at > >> > org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:249) > >> at > >> > org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:155) > >> at > >> > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:246) > >> at > >> > org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:160) > >> at > >> > org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:285) > >> at > >> > org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:352) > >> at > >> > org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:245) > >> at > >> > org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:188) > >> at > >> > org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49) > >> at > >> > org.cipres.treebase.web.listeners.StartupListener.contextInitialized(StartupListener.java:45) > >> at > >> > org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3795) > >> at > >> > org.apache.catalina.core.StandardContext.start(StandardContext.java:4252) > >> at > >> > org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760) > >> at > >> org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740) > >> at > >> org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544) > >> at > >> org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:831) > >> at > >> org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:720) > >> at > >> org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490) > >> at > >> org.apache.catalina.startup.HostConfig.start(HostConfig.java:1150) > >> at > >> > org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311) > >> at > >> > org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120) > >> at > >> org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022) > >> at > >> org.apache.catalina.core.StandardHost.start(StandardHost.java:736) > >> at > >> org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014) > >> at > >> org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443) > >> at > >> org.apache.catalina.core.StandardService.start(StandardService.java:448) > >> at > >> org.apache.catalina.core.StandardServer.start(StandardServer.java:700) > >> at org.apache.catalina.startup.Catalina.start(Catalina.java:552) > >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) > >> at > >> > sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > >> at > >> > sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) > >> at java.lang.reflect.Method.invoke(Method.java:592) > >> at > org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295) > >> at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433) > >> Caused by: java.lang.reflect.InvocationTargetException > >> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native > >> Method) > >> at > >> > sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) > >> at > >> > sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) > >> at > java.lang.reflect.Constructor.newInstance(Constructor.java:501) > >> at > >> > org.hibernate.engine.UnsavedValueFactory.instantiate(UnsavedValueFactory.java:22) > >> ... 49 more > >> Caused by: java.lang.Error: Unresolved compilation problems: > >> The import mesquite.lib cannot be resolved > >> StringUtil cannot be resolved > >> StringUtil cannot be resolved > >> StringUtil cannot be resolved > >> StringUtil cannot be resolved > >> > >> at > >> > org.cipres.treebase.domain.taxon.TaxonLabelSet.<init>(TaxonLabelSet.java:18) > >> ... 54 more > >> > >> > >> > >> > >> > > > > > ------------------------------------------------------------------------------ > > This SF.Net email is sponsored by the Verizon Developer Community > > Take advantage of Verizon's best-in-class app development support > > A streamlined, 14 day to market process makes app distribution fast and > easy > > Join now and get one step closer to millions of Verizon customers > > http://p.sf.net/sfu/verizon-dev2dev > > _______________________________________________ > > Treebase-devel mailing list > > Tre...@li... > > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > > > -- > > =========================================================== > > : Hilmar Lapp -:- Durham, NC -:- informatics.nescent.org : > > =========================================================== > > > > > > > > > ------------------------------------------------------------------------------ > > This SF.Net email is sponsored by the Verizon Developer Community > > Take advantage of Verizon's best-in-class app development support > > A streamlined, 14 day to market process makes app distribution fast and > easy > > Join now and get one step closer to millions of Verizon customers > > http://p.sf.net/sfu/verizon-dev2dev > > _______________________________________________ > > Treebase-devel mailing list > > Tre...@li... > > https://lists.sourceforge.net/lists/listinfo/treebase-devel > > > > > > > > -- > Dr. Rutger A. Vos > School of Biological Sciences > Philip Lyle Building, Level 4 > University of Reading > Reading > RG6 6BX > United Kingdom > Tel: +44 (0) 118 378 7535 > http://www.nexml.org > http://rutgervos.blogspot.com > |
