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[Treebase-guts] SF.net SVN: treebase:[395] trunk/treebase-core/lib/mesquite
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From: <rv...@us...> - 2009-12-16 11:07:13
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Revision: 395
http://treebase.svn.sourceforge.net/treebase/?rev=395&view=rev
Author: rvos
Date: 2009-12-16 11:07:00 +0000 (Wed, 16 Dec 2009)
Log Message:
-----------
Adding mesquite classes
Added Paths:
-----------
trunk/treebase-core/lib/mesquite/Mesquite.class
trunk/treebase-core/lib/mesquite/tol/
trunk/treebase-core/lib/mesquite/tol/CatalogueOfLifeURLServer/
trunk/treebase-core/lib/mesquite/tol/CatalogueOfLifeURLServer/CatalogueOfLifeURLServer.class
trunk/treebase-core/lib/mesquite/tol/GenBankTaxonURLServer/
trunk/treebase-core/lib/mesquite/tol/GenBankTaxonURLServer/GenBankTaxonURLServer.class
trunk/treebase-core/lib/mesquite/tol/GetToLTree/
trunk/treebase-core/lib/mesquite/tol/GetToLTree/GetToLTree.class
trunk/treebase-core/lib/mesquite/tol/SearchToLTaxon/
trunk/treebase-core/lib/mesquite/tol/SearchToLTaxon/32ToL.gif
trunk/treebase-core/lib/mesquite/tol/SearchToLTaxon/64ToL.gif
trunk/treebase-core/lib/mesquite/tol/SearchToLTaxon/SearchToLTaxon.class
trunk/treebase-core/lib/mesquite/tol/SearchToLTaxon/SearchToLTaxonToolExtra.class
trunk/treebase-core/lib/mesquite/tol/SearchToLTaxon/ToL.gif
trunk/treebase-core/lib/mesquite/tol/TaxonOnWebDB/
trunk/treebase-core/lib/mesquite/tol/TaxonOnWebDB/32TaxonOnWeb.gif
trunk/treebase-core/lib/mesquite/tol/TaxonOnWebDB/64TaxonOnWeb.gif
trunk/treebase-core/lib/mesquite/tol/TaxonOnWebDB/TaxonOnWeb.gif
trunk/treebase-core/lib/mesquite/tol/TaxonOnWebDB/TaxonOnWebDB.class
trunk/treebase-core/lib/mesquite/tol/TaxonOnWebDB/TaxonOnWebDBToolExtra.class
trunk/treebase-core/lib/mesquite/tol/ToLURLServer/
trunk/treebase-core/lib/mesquite/tol/ToLURLServer/ToLURLServer.class
trunk/treebase-core/lib/mesquite/tol/TreeBaseURLServer/
trunk/treebase-core/lib/mesquite/tol/TreeBaseURLServer/TreeBaseURLServer.class
trunk/treebase-core/lib/mesquite/tol/iSpeciesURLServer/
trunk/treebase-core/lib/mesquite/tol/iSpeciesURLServer/iSpeciesURLServer.class
trunk/treebase-core/lib/mesquite/tol/lib/
trunk/treebase-core/lib/mesquite/tol/lib/TaxonOnWebServer.class
trunk/treebase-core/lib/mesquite/tol/lib/ToLProjectOpener.class
trunk/treebase-core/lib/mesquite/tol/lib/ToLUtil.class
trunk/treebase-core/lib/mesquite/tol/uBioURLServer/
trunk/treebase-core/lib/mesquite/tol/uBioURLServer/uBioURLServer.class
trunk/treebase-core/lib/mesquite/treefarm/
trunk/treebase-core/lib/mesquite/treefarm/AllRerootings/
trunk/treebase-core/lib/mesquite/treefarm/AllRerootings/AllRerootings.class
trunk/treebase-core/lib/mesquite/treefarm/AllTrees/
trunk/treebase-core/lib/mesquite/treefarm/AllTrees/AllTrees.class
trunk/treebase-core/lib/mesquite/treefarm/AugmentTreeRandomly/
trunk/treebase-core/lib/mesquite/treefarm/AugmentTreeRandomly/AugmentTreeRandomly.class
trunk/treebase-core/lib/mesquite/treefarm/AvgTaxonValueAmgTrees/
trunk/treebase-core/lib/mesquite/treefarm/AvgTaxonValueAmgTrees/AvgTaxonValueAmgTrees.class
trunk/treebase-core/lib/mesquite/treefarm/BlockDirectlyFromFile/
trunk/treebase-core/lib/mesquite/treefarm/BlockDirectlyFromFile/BlockDirectlyFromFile.class
trunk/treebase-core/lib/mesquite/treefarm/CladeInTree/
trunk/treebase-core/lib/mesquite/treefarm/CladeInTree/CladeInTree.class
trunk/treebase-core/lib/mesquite/treefarm/CladeMatch/
trunk/treebase-core/lib/mesquite/treefarm/CladeMatch/CladeMatch.class
trunk/treebase-core/lib/mesquite/treefarm/CollessImbalance/
trunk/treebase-core/lib/mesquite/treefarm/CollessImbalance/CollessImbalance.class
trunk/treebase-core/lib/mesquite/treefarm/CompareOtherTree/
trunk/treebase-core/lib/mesquite/treefarm/CompareOtherTree/CompareOtherTree.class
trunk/treebase-core/lib/mesquite/treefarm/CompareOtherTrees/
trunk/treebase-core/lib/mesquite/treefarm/CompareOtherTrees/CompareOtherTrees.class
trunk/treebase-core/lib/mesquite/treefarm/ConcatTreeBlocks/
trunk/treebase-core/lib/mesquite/treefarm/ConcatTreeBlocks/ConcatTreeBlocks.class
trunk/treebase-core/lib/mesquite/treefarm/CondensedTreeSource/
trunk/treebase-core/lib/mesquite/treefarm/CondensedTreeSource/CondensedTreeSource.class
trunk/treebase-core/lib/mesquite/treefarm/ConsensusTreesFromBlocks/
trunk/treebase-core/lib/mesquite/treefarm/ConsensusTreesFromBlocks/ConsCompatibilityTest.class
trunk/treebase-core/lib/mesquite/treefarm/ConsensusTreesFromBlocks/ConsensusTreesFromBlocks.class
trunk/treebase-core/lib/mesquite/treefarm/ConvexInTree/
trunk/treebase-core/lib/mesquite/treefarm/ConvexInTree/ConvexInTree.class
trunk/treebase-core/lib/mesquite/treefarm/Correlation2Trees/
trunk/treebase-core/lib/mesquite/treefarm/Correlation2Trees/Correlation2Trees.class
trunk/treebase-core/lib/mesquite/treefarm/CurrentTree/
trunk/treebase-core/lib/mesquite/treefarm/CurrentTree/CurrentTree.class
trunk/treebase-core/lib/mesquite/treefarm/DeleteReticulations/
trunk/treebase-core/lib/mesquite/treefarm/DeleteReticulations/DeleteReticulations.class
trunk/treebase-core/lib/mesquite/treefarm/DetermModifTree/
trunk/treebase-core/lib/mesquite/treefarm/DetermModifTree/DetermModifTree.class
trunk/treebase-core/lib/mesquite/treefarm/EmailTree/
trunk/treebase-core/lib/mesquite/treefarm/EmailTree/EmailTree.class
trunk/treebase-core/lib/mesquite/treefarm/EqualRatesSpSampled/
trunk/treebase-core/lib/mesquite/treefarm/EqualRatesSpSampled/EqualRatesSpSampled.class
trunk/treebase-core/lib/mesquite/treefarm/EqualRatesSpSampled/QuickTree.class
trunk/treebase-core/lib/mesquite/treefarm/ExtractTreeBlock/
trunk/treebase-core/lib/mesquite/treefarm/ExtractTreeBlock/ExtractTreeBlock.class
trunk/treebase-core/lib/mesquite/treefarm/FilterTreesOtherSrc/
trunk/treebase-core/lib/mesquite/treefarm/FilterTreesOtherSrc/FilterTreesOtherSrc.class
trunk/treebase-core/lib/mesquite/treefarm/MRPMatrices/
trunk/treebase-core/lib/mesquite/treefarm/MRPMatrices/MRPMatrices.class
trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/
trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/32allRerootings.gif
trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/64allRerootings.gif
trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/AllRerootToolExtra.class
trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/MakeRerootings.class
trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/allRerootings.gif
trunk/treebase-core/lib/mesquite/treefarm/ModTreesOtherSource/
trunk/treebase-core/lib/mesquite/treefarm/ModTreesOtherSource/ModTreesOtherSource.class
trunk/treebase-core/lib/mesquite/treefarm/NodeDepth/
trunk/treebase-core/lib/mesquite/treefarm/NodeDepth/NodeDepth.class
trunk/treebase-core/lib/mesquite/treefarm/NoiseToBranchLengths/
trunk/treebase-core/lib/mesquite/treefarm/NoiseToBranchLengths/NoiseToBranchLengths.class
trunk/treebase-core/lib/mesquite/treefarm/OutgroupRoot/
trunk/treebase-core/lib/mesquite/treefarm/OutgroupRoot/OutgroupRoot.class
trunk/treebase-core/lib/mesquite/treefarm/ProbRndTreeModifier/
trunk/treebase-core/lib/mesquite/treefarm/ProbRndTreeModifier/ProbRndTreeModifier.class
trunk/treebase-core/lib/mesquite/treefarm/RandomBranchMoves/
trunk/treebase-core/lib/mesquite/treefarm/RandomBranchMoves/RandomBranchMoves.class
trunk/treebase-core/lib/mesquite/treefarm/RandomModifTree/
trunk/treebase-core/lib/mesquite/treefarm/RandomModifTree/RandomModifTree.class
trunk/treebase-core/lib/mesquite/treefarm/RandomResolve/
trunk/treebase-core/lib/mesquite/treefarm/RandomResolve/RandomResolve.class
trunk/treebase-core/lib/mesquite/treefarm/RandomlyModifiedTrees/
trunk/treebase-core/lib/mesquite/treefarm/RandomlyModifiedTrees/RandomlyModifiedTrees.class
trunk/treebase-core/lib/mesquite/treefarm/RarefyTree/
trunk/treebase-core/lib/mesquite/treefarm/RarefyTree/RarefyTree.class
trunk/treebase-core/lib/mesquite/treefarm/RearrangedTree/
trunk/treebase-core/lib/mesquite/treefarm/RearrangedTree/RearrangedTree.class
trunk/treebase-core/lib/mesquite/treefarm/ReshuffleTaxa/
trunk/treebase-core/lib/mesquite/treefarm/ReshuffleTaxa/ReshuffleTaxa.class
trunk/treebase-core/lib/mesquite/treefarm/SharedClades2Trees/
trunk/treebase-core/lib/mesquite/treefarm/SharedClades2Trees/SharedClades2Trees.class
trunk/treebase-core/lib/mesquite/treefarm/SharedPartitions2Trees/
trunk/treebase-core/lib/mesquite/treefarm/SharedPartitions2Trees/SharedPartitions2Trees.class
trunk/treebase-core/lib/mesquite/treefarm/TaxonValueFromTree/
trunk/treebase-core/lib/mesquite/treefarm/TaxonValueFromTree/TaxonValueFromTree.class
trunk/treebase-core/lib/mesquite/treefarm/TerminalInstability/
trunk/treebase-core/lib/mesquite/treefarm/TerminalInstability/TerminalInstability.class
trunk/treebase-core/lib/mesquite/treefarm/TreeSatisfiesValue/
trunk/treebase-core/lib/mesquite/treefarm/TreeSatisfiesValue/TreeSatisfiesValue.class
trunk/treebase-core/lib/mesquite/treefarm/TreeTotalPathLength/
trunk/treebase-core/lib/mesquite/treefarm/TreeTotalPathLength/TreeTotalPathLength.class
trunk/treebase-core/lib/mesquite/treefarm/aTreeFarmIntro/
trunk/treebase-core/lib/mesquite/treefarm/aTreeFarmIntro/aTreeFarmIntro.class
trunk/treebase-core/lib/mesquite/treefarm/aTreeFarmIntro/splash.gif
trunk/treebase-core/lib/mesquite/treefarm/aTreeFarmIntro/splash.psd
trunk/treebase-core/lib/mesquite/treefarm/explanation.txt
trunk/treebase-core/lib/mesquite/treefarm/lib/
trunk/treebase-core/lib/mesquite/treefarm/lib/BlockFromTreeSource.class
trunk/treebase-core/lib/mesquite/treefarm/lib/DetTreeModifier.class
trunk/treebase-core/lib/mesquite/treefarm/lib/LiveTreeBlocks.class
trunk/treebase-core/lib/mesquite/treefarm/lib/NForTaxonWithTree.class
trunk/treebase-core/lib/mesquite/treefarm/lib/NForTaxonWithTrees.class
trunk/treebase-core/lib/mesquite/treefarm/lib/PatristicDistances.class
trunk/treebase-core/lib/mesquite/treefarm/lib/RndTreeModifier.class
trunk/treebase-core/lib/mesquite/treefarm/lib/SourceFromTreeSource.class
trunk/treebase-core/lib/mesquite/treefarm/lib/SourceModifiedTree.class
trunk/treebase-core/lib/mesquite/trees/
trunk/treebase-core/lib/mesquite/trees/AddTaxaToTree/
trunk/treebase-core/lib/mesquite/trees/AddTaxaToTree/AddTaxaToTree.class
trunk/treebase-core/lib/mesquite/trees/AllBranchLengthsOne/
trunk/treebase-core/lib/mesquite/trees/AllBranchLengthsOne/AllBranchLengthsOne.class
trunk/treebase-core/lib/mesquite/trees/AllUnassignBrLengths1/
trunk/treebase-core/lib/mesquite/trees/AllUnassignBrLengths1/AllUnassignBrLengths1.class
trunk/treebase-core/lib/mesquite/trees/AlterLengths/
trunk/treebase-core/lib/mesquite/trees/AlterLengths/AlterLengths.class
trunk/treebase-core/lib/mesquite/trees/AlterTrees/
trunk/treebase-core/lib/mesquite/trees/AlterTrees/AlterTrees.class
trunk/treebase-core/lib/mesquite/trees/ArcTree/
trunk/treebase-core/lib/mesquite/trees/ArcTree/ArcTree.class
trunk/treebase-core/lib/mesquite/trees/ArcTree/ArcTreeDrawing.class
trunk/treebase-core/lib/mesquite/trees/AverageTreeValue/
trunk/treebase-core/lib/mesquite/trees/AverageTreeValue/AverageTreeValue.class
trunk/treebase-core/lib/mesquite/trees/BallsNSticks/
trunk/treebase-core/lib/mesquite/trees/BallsNSticks/BallsNSticks.class
trunk/treebase-core/lib/mesquite/trees/BallsNSticks/BallsNSticksDrawing.class
trunk/treebase-core/lib/mesquite/trees/BasicDrawTaxonNames/
trunk/treebase-core/lib/mesquite/trees/BasicDrawTaxonNames/BasicDrawTaxonNames.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeDrawCoordinator/
trunk/treebase-core/lib/mesquite/trees/BasicTreeDrawCoordinator/BasicTreeDisplay.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeDrawCoordinator/BasicTreeDrawCoordinator.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowCoord/
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowCoord/BasicTreeWindowCoord.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32collapse.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32collapseAllBelow.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32collapseall.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32interchange.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32ladderize.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32magnify.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32reroot.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32reverseLadderize.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32scissors.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32triangle.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32zoom.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/32zoomOut.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64collapse.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64collapseAllBelow.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64collapseall.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64interchange.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64ladderize.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64magnify.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64reroot.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64reverseLadderize.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64scissors.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64triangle.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64zoom.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/64zoomOut.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/BasicTreeWindow.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/BasicTreeWindowMaker.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/BirdsEyeExtra.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/BirdsEyePanel.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/ControlStrip.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/MagnifyExtra.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/MessagePanel.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/RecentButton.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/TreeScroll.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/TreeScrollPane.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/TreeWindowPalette.class
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/collapse.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/collapseAllBelow.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/collapseall.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/interchange.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/ladderize.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/magnify.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent0.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent1.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent10.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent2.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent3.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent4.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent5.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent6.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent7.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent8.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/recent/recent9.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/reroot.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/reverseLadderize.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/scissors.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/triangle.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/zoom.gif
trunk/treebase-core/lib/mesquite/trees/BasicTreeWindowMaker/zoomOut.gif
trunk/treebase-core/lib/mesquite/trees/BooleanTreeValue/
trunk/treebase-core/lib/mesquite/trees/BooleanTreeValue/BooleanTreeValue.class
trunk/treebase-core/lib/mesquite/trees/BranchInfo/
trunk/treebase-core/lib/mesquite/trees/BranchInfo/32branchInfo.gif
trunk/treebase-core/lib/mesquite/trees/BranchInfo/64branchInfo.gif
trunk/treebase-core/lib/mesquite/trees/BranchInfo/BranchInfo.class
trunk/treebase-core/lib/mesquite/trees/BranchInfo/InfoToolExtra.class
trunk/treebase-core/lib/mesquite/trees/BranchInfo/branchInfo.gif
trunk/treebase-core/lib/mesquite/trees/BranchLengthFromRoot/
trunk/treebase-core/lib/mesquite/trees/BranchLengthFromRoot/BranchLengthFromRoot.class
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/32adjustLengths.gif
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/32dragLengths.gif
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/64adjustLengths.gif
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/64dragLengths.gif
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/AdjustToolExtra.class
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/BranchLengthsAdjust.class
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/adjustLengths.gif
trunk/treebase-core/lib/mesquite/trees/BranchLengthsAdjust/dragLengths.gif
trunk/treebase-core/lib/mesquite/trees/CollapseZeroToPolys/
trunk/treebase-core/lib/mesquite/trees/CollapseZeroToPolys/CollapseZeroToPolys.class
trunk/treebase-core/lib/mesquite/trees/ColorBranches/
trunk/treebase-core/lib/mesquite/trees/ColorBranches/32color.gif
trunk/treebase-core/lib/mesquite/trees/ColorBranches/64color.gif
trunk/treebase-core/lib/mesquite/trees/ColorBranches/ColorBranches.class
trunk/treebase-core/lib/mesquite/trees/ColorBranches/ColorToolExtra.class
trunk/treebase-core/lib/mesquite/trees/ColorBranches/color.gif
trunk/treebase-core/lib/mesquite/trees/DeassignBranchLengths/
trunk/treebase-core/lib/mesquite/trees/DeassignBranchLengths/DeassignBranchLengths.class
trunk/treebase-core/lib/mesquite/trees/DefaultTrees/
trunk/treebase-core/lib/mesquite/trees/DefaultTrees/DefaultTrees.class
trunk/treebase-core/lib/mesquite/trees/DefiniteTreeSource/
trunk/treebase-core/lib/mesquite/trees/DefiniteTreeSource/DefiniteTreeSource.class
trunk/treebase-core/lib/mesquite/trees/DependentTreeWindow/
trunk/treebase-core/lib/mesquite/trees/DependentTreeWindow/DepMessagePanel.class
trunk/treebase-core/lib/mesquite/trees/DependentTreeWindow/DepTreeExtra.class
trunk/treebase-core/lib/mesquite/trees/DependentTreeWindow/DepTreeWindow.class
trunk/treebase-core/lib/mesquite/trees/DependentTreeWindow/DependentTreeWindow.class
trunk/treebase-core/lib/mesquite/trees/DiagonalDrawTree/
trunk/treebase-core/lib/mesquite/trees/DiagonalDrawTree/DiagonalDrawTree.class
trunk/treebase-core/lib/mesquite/trees/DiagonalDrawTree/DiagonalTreeDrawing.class
trunk/treebase-core/lib/mesquite/trees/EqualRatesMarkovSp/
trunk/treebase-core/lib/mesquite/trees/EqualRatesMarkovSp/EqualRatesMarkovSp.class
trunk/treebase-core/lib/mesquite/trees/EquiprobableTrees/
trunk/treebase-core/lib/mesquite/trees/EquiprobableTrees/EquiprobableTrees.class
trunk/treebase-core/lib/mesquite/trees/LabelBranchLengths/
trunk/treebase-core/lib/mesquite/trees/LabelBranchLengths/BranchLengthsLabeler.class
trunk/treebase-core/lib/mesquite/trees/LabelBranchLengths/HandlePanel.class
trunk/treebase-core/lib/mesquite/trees/LabelBranchLengths/HandlesAtNodes.class
trunk/treebase-core/lib/mesquite/trees/LabelBranchLengths/LabelBranchLengths.class
trunk/treebase-core/lib/mesquite/trees/ListedTreeBlocks/
trunk/treebase-core/lib/mesquite/trees/ListedTreeBlocks/ListedTreeBlocks.class
trunk/treebase-core/lib/mesquite/trees/ManageTrees/
trunk/treebase-core/lib/mesquite/trees/ManageTrees/ManageTrees.class
trunk/treebase-core/lib/mesquite/trees/ManageTrees/TreeBlock.class
trunk/treebase-core/lib/mesquite/trees/ManageTrees/TreeBlockTest.class
trunk/treebase-core/lib/mesquite/trees/ManageTrees/TreeBlockThread.class
trunk/treebase-core/lib/mesquite/trees/ManyTreesFromFile/
trunk/treebase-core/lib/mesquite/trees/ManyTreesFromFile/ManyTreesFromFile.class
trunk/treebase-core/lib/mesquite/trees/MirrorTreeWindowMaker/
trunk/treebase-core/lib/mesquite/trees/MirrorTreeWindowMaker/MirrorExtra.class
trunk/treebase-core/lib/mesquite/trees/MirrorTreeWindowMaker/MirrorTreeWindow.class
trunk/treebase-core/lib/mesquite/trees/MirrorTreeWindowMaker/MirrorTreeWindowMaker.class
trunk/treebase-core/lib/mesquite/trees/MultiTreeWindowMaker/
trunk/treebase-core/lib/mesquite/trees/MultiTreeWindowMaker/MTWScroll.class
trunk/treebase-core/lib/mesquite/trees/MultiTreeWindowMaker/MultiTreeWindow.class
trunk/treebase-core/lib/mesquite/trees/MultiTreeWindowMaker/MultiTreeWindowMaker.class
trunk/treebase-core/lib/mesquite/trees/NegativeToZeroBL/
trunk/treebase-core/lib/mesquite/trees/NegativeToZeroBL/NegativeToZeroBL.class
trunk/treebase-core/lib/mesquite/trees/NodeLocsStandard/
trunk/treebase-core/lib/mesquite/trees/NodeLocsStandard/NodeLocsExtra.class
trunk/treebase-core/lib/mesquite/trees/NodeLocsStandard/NodeLocsStandard.class
trunk/treebase-core/lib/mesquite/trees/NodeNamer/
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trunk/treebase-core/lib/mesquite/trees/NodeNamer/64nodeNamer.gif
trunk/treebase-core/lib/mesquite/trees/NodeNamer/NodeNamer.class
trunk/treebase-core/lib/mesquite/trees/NodeNamer/NodeNamerExtra.class
trunk/treebase-core/lib/mesquite/trees/NodeNamer/nodeNamer.gif
trunk/treebase-core/lib/mesquite/trees/NumFor2CharCurrentTree/
trunk/treebase-core/lib/mesquite/trees/NumFor2CharCurrentTree/NumFor2CharCurrentTree.class
trunk/treebase-core/lib/mesquite/trees/NumForCharCurrentTree/
trunk/treebase-core/lib/mesquite/trees/NumForCharCurrentTree/NumForCharCurrentTree.class
trunk/treebase-core/lib/mesquite/trees/NumForCharOnTree/
trunk/treebase-core/lib/mesquite/trees/NumForCharOnTree/NumForCharOnTree.class
trunk/treebase-core/lib/mesquite/trees/NumForCharRespTree/
trunk/treebase-core/lib/mesquite/trees/NumForCharRespTree/NumForCharRespTree.class
trunk/treebase-core/lib/mesquite/trees/NumForMatCurrentTree/
trunk/treebase-core/lib/mesquite/trees/NumForMatCurrentTree/NumForMatCurrentTree.class
trunk/treebase-core/lib/mesquite/trees/NumForNodesWithChar/
trunk/treebase-core/lib/mesquite/trees/NumForNodesWithChar/NumForNodesWithChar.class
trunk/treebase-core/lib/mesquite/trees/NumForNodesWithCharHist/
trunk/treebase-core/lib/mesquite/trees/NumForNodesWithCharHist/NumForNodesWithCharHist.class
trunk/treebase-core/lib/mesquite/trees/NumForNodesWithMat/
trunk/treebase-core/lib/mesquite/trees/NumForNodesWithMat/NumForNodesWithMat.class
trunk/treebase-core/lib/mesquite/trees/NumForTreeWith2Chars/
trunk/treebase-core/lib/mesquite/trees/NumForTreeWith2Chars/NumForTreeWith2Chars.class
trunk/treebase-core/lib/mesquite/trees/NumForTreeWithChar/
trunk/treebase-core/lib/mesquite/trees/NumForTreeWithChar/NumForTreeWithChar.class
trunk/treebase-core/lib/mesquite/trees/NumberOfTaxa/
trunk/treebase-core/lib/mesquite/trees/NumberOfTaxa/NumberOfTaxa.class
trunk/treebase-core/lib/mesquite/trees/NumsForNodesBrLengths/
trunk/treebase-core/lib/mesquite/trees/NumsForNodesBrLengths/NumsForNodesBrLengths.class
trunk/treebase-core/lib/mesquite/trees/ObedientTreeWindow/
trunk/treebase-core/lib/mesquite/trees/ObedientTreeWindow/OTreeWindow.class
trunk/treebase-core/lib/mesquite/trees/ObedientTreeWindow/ObedientTreeWindow.class
trunk/treebase-core/lib/mesquite/trees/OtherTreeBlocks/
trunk/treebase-core/lib/mesquite/trees/OtherTreeBlocks/OtherTreeBlocks.class
trunk/treebase-core/lib/mesquite/trees/ResolvePolytomiesToZero/
trunk/treebase-core/lib/mesquite/trees/ResolvePolytomiesToZero/ResolvePolytomiesToZero.class
trunk/treebase-core/lib/mesquite/trees/SampleManyTreesFromFile/
trunk/treebase-core/lib/mesquite/trees/SampleManyTreesFromFile/SampleManyTreesFromFile.class
trunk/treebase-core/lib/mesquite/trees/ScaleBranchLengths/
trunk/treebase-core/lib/mesquite/trees/ScaleBranchLengths/ScaleBranchLengths.class
trunk/treebase-core/lib/mesquite/trees/ScaleSelBranchLengths/
trunk/treebase-core/lib/mesquite/trees/ScaleSelBranchLengths/ScaleSelBranchLengths.class
trunk/treebase-core/lib/mesquite/trees/SearchForBetterTree/
trunk/treebase-core/lib/mesquite/trees/SearchForBetterTree/SearchForBetterTree.class
trunk/treebase-core/lib/mesquite/trees/SearchTreeToolAssistant/
trunk/treebase-core/lib/mesquite/trees/SearchTreeToolAssistant/32searchTree.gif
trunk/treebase-core/lib/mesquite/trees/SearchTreeToolAssistant/64searchTree.gif
trunk/treebase-core/lib/mesquite/trees/SearchTreeToolAssistant/SearchTreeToolAssistant.class
trunk/treebase-core/lib/mesquite/trees/SearchTreeToolAssistant/SearchTreeToolExtra.class
trunk/treebase-core/lib/mesquite/trees/SearchTreeToolAssistant/searchTree.gif
trunk/treebase-core/lib/mesquite/trees/SelectBranches/
trunk/treebase-core/lib/mesquite/trees/SelectBranches/32select.gif
trunk/treebase-core/lib/mesquite/trees/SelectBranches/32selectClade.gif
trunk/treebase-core/lib/mesquite/trees/SelectBranches/64select.gif
trunk/treebase-core/lib/mesquite/trees/SelectBranches/64selectClade.gif
trunk/treebase-core/lib/mesquite/trees/SelectBranches/SelectBranches.class
trunk/treebase-core/lib/mesquite/trees/SelectBranches/SelectToolExtra.class
trunk/treebase-core/lib/mesquite/trees/SelectBranches/select.gif
trunk/treebase-core/lib/mesquite/trees/SelectBranches/selectClade.gif
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/32selectTaxa.gif
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/32selectTaxaInClade.gif
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/64selectTaxa.gif
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/64selectTaxaInClade.gif
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/SelectTaxaInClade.class
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/SelectTaxaToolExtra.class
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/selectTaxa.gif
trunk/treebase-core/lib/mesquite/trees/SelectTaxaInClade/selectTaxaInClade.gif
trunk/treebase-core/lib/mesquite/trees/SetAssumptionDefault/
trunk/treebase-core/lib/mesquite/trees/SetAssumptionDefault/SetAssumptionDefault.class
trunk/treebase-core/lib/mesquite/trees/SetAssumptionHard/
trunk/treebase-core/lib/mesquite/trees/SetAssumptionHard/SetAssumptionHard.class
trunk/treebase-core/lib/mesquite/trees/SetAssumptionSoft/
trunk/treebase-core/lib/mesquite/trees/SetAssumptionSoft/SetAssumptionSoft.class
trunk/treebase-core/lib/mesquite/trees/SetBranchLengths/
trunk/treebase-core/lib/mesquite/trees/SetBranchLengths/SetBranchLengths.class
trunk/treebase-core/lib/mesquite/trees/SetBranchLengthsFromNames/
trunk/treebase-core/lib/mesquite/trees/SetBranchLengthsFromNames/SetBranchLengthsFromNames.class
trunk/treebase-core/lib/mesquite/trees/SetSelBranchLengths/
trunk/treebase-core/lib/mesquite/trees/SetSelBranchLengths/SetSelBranchLengths.class
trunk/treebase-core/lib/mesquite/trees/SetToLadderized/
trunk/treebase-core/lib/mesquite/trees/SetToLadderized/SetToLadderized.class
trunk/treebase-core/lib/mesquite/trees/SetToRooted/
trunk/treebase-core/lib/mesquite/trees/SetToRooted/SetToRooted.class
trunk/treebase-core/lib/mesquite/trees/SetToUnrooted/
trunk/treebase-core/lib/mesquite/trees/SetToUnrooted/SetToUnrooted.class
trunk/treebase-core/lib/mesquite/trees/SetTreeDefaults/
trunk/treebase-core/lib/mesquite/trees/SetTreeDefaults/SetTreeDefaults.class
trunk/treebase-core/lib/mesquite/trees/ShadeNumbersOnTree/
trunk/treebase-core/lib/mesquite/trees/ShadeNumbersOnTree/ShadeNumbersDecorator.class
trunk/treebase-core/lib/mesquite/trees/ShadeNumbersOnTree/ShadeNumbersOnTree.class
trunk/treebase-core/lib/mesquite/trees/SimulateTree/
trunk/treebase-core/lib/mesquite/trees/SimulateTree/SimulateTree.class
trunk/treebase-core/lib/mesquite/trees/SimulatedTreeBlocks/
trunk/treebase-core/lib/mesquite/trees/SimulatedTreeBlocks/SimulatedTreeBlocks.class
trunk/treebase-core/lib/mesquite/trees/SquareTree/
trunk/treebase-core/lib/mesquite/trees/SquareTree/SquareTree.class
trunk/treebase-core/lib/mesquite/trees/SquareTree/SquareTreeDrawing.class
trunk/treebase-core/lib/mesquite/trees/StoredTreeBlocks/
trunk/treebase-core/lib/mesquite/trees/StoredTreeBlocks/StoredTreeBlocks.class
trunk/treebase-core/lib/mesquite/trees/StoredTrees/
trunk/treebase-core/lib/mesquite/trees/StoredTrees/STCompatibilityTest.class
trunk/treebase-core/lib/mesquite/trees/StoredTrees/StoredTrees.class
trunk/treebase-core/lib/mesquite/trees/TreeLegendMaker/
trunk/treebase-core/lib/mesquite/trees/TreeLegendMaker/TreeLegend.class
trunk/treebase-core/lib/mesquite/trees/TreeLegendMaker/TreeLegendMaker.class
trunk/treebase-core/lib/mesquite/trees/TreeLegendMaker/TreeLegendOperator.class
trunk/treebase-core/lib/mesquite/trees/TreeNotesMaker/
trunk/treebase-core/lib/mesquite/trees/TreeNotesMaker/TreeNote.class
trunk/treebase-core/lib/mesquite/trees/TreeNotesMaker/TreeNotesMaker.class
trunk/treebase-core/lib/mesquite/trees/TreeNotesMaker/TreeNotesOperator.class
trunk/treebase-core/lib/mesquite/trees/TreeOfContext/
trunk/treebase-core/lib/mesquite/trees/TreeOfContext/TreeOfContext.class
trunk/treebase-core/lib/mesquite/trees/TreeValueUsingMatrix/
trunk/treebase-core/lib/mesquite/trees/TreeValueUsingMatrix/TreeValueUsingMatrix.class
trunk/treebase-core/lib/mesquite/trees/Ultrametricize/
trunk/treebase-core/lib/mesquite/trees/Ultrametricize/Ultrametricize.class
trunk/treebase-core/lib/mesquite/trees/UtilityCoordinator/
trunk/treebase-core/lib/mesquite/trees/UtilityCoordinator/UtilityCoordinator.class
trunk/treebase-core/lib/mesquite/trees/ValuesAtNodes/
trunk/treebase-core/lib/mesquite/trees/ValuesAtNodes/ParamString.class
trunk/treebase-core/lib/mesquite/trees/ValuesAtNodes/ValuesAtNodes.class
trunk/treebase-core/lib/mesquite/trees/ValuesAtNodes/ValuesAtNodesOperator.class
trunk/treebase-core/lib/mesquite/trees/aTreesIntro/
trunk/treebase-core/lib/mesquite/trees/aTreesIntro/aTreesIntro.class
trunk/treebase-core/lib/mesquite/trees/explanation.txt
trunk/treebase-core/lib/mesquite/trees/lib/
trunk/treebase-core/lib/mesquite/trees/lib/DrawTreeUtil.class
trunk/treebase-core/lib/mesquite/trees/lib/FIleCheckThread.class
trunk/treebase-core/lib/mesquite/trees/lib/ManyTreesFromFileLib.class
trunk/treebase-core/lib/mesquite/trees/lib/SMessagePanel.class
trunk/treebase-core/lib/mesquite/trees/lib/SimpleTreeWindow.class
trunk/treebase-core/lib/mesquite/trees/lib/SimpleTreeWindowMaker.class
trunk/treebase-core/lib/mesquite/trees/lib/TaxonPolygon.class
trunk/treebase-core/lib/mesquite/trees/lib/TreeSearchUtil.class
trunk/treebase-core/lib/mesquite/trunk/
trunk/treebase-core/lib/mesquite/trunk/AboutPanel.class
trunk/treebase-core/lib/mesquite/trunk/AboutScrollPane.class
trunk/treebase-core/lib/mesquite/trunk/AboutWindow.class
trunk/treebase-core/lib/mesquite/trunk/ClassPathHacker.class
trunk/treebase-core/lib/mesquite/trunk/ClockWatcherThread.class
trunk/treebase-core/lib/mesquite/trunk/ConfigFileRecord.class
trunk/treebase-core/lib/mesquite/trunk/DirectInit.class
trunk/treebase-core/lib/mesquite/trunk/EAWTHandler$EAWTH.class
trunk/treebase-core/lib/mesquite/trunk/EAWTHandler$QT.class
trunk/treebase-core/lib/mesquite/trunk/EAWTHandler.class
trunk/treebase-core/lib/mesquite/trunk/FileOpener.class
trunk/treebase-core/lib/mesquite/trunk/MRJHandler$QT.class
trunk/treebase-core/lib/mesquite/trunk/MRJHandler.class
trunk/treebase-core/lib/mesquite/trunk/ModuleLoader.class
trunk/treebase-core/lib/mesquite/trunk/PhoneHomeThread.class
trunk/treebase-core/lib/mesquite/trunk/ProjectTreeWindow.class
trunk/treebase-core/lib/mesquite/trunk/SplashPanel.class
trunk/treebase-core/lib/mesquite/trunk/WelcomeDialog.class
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+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/EqualRatesSpSampled/QuickTree.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/ExtractTreeBlock/ExtractTreeBlock.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/FilterTreesOtherSrc/FilterTreesOtherSrc.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/MRPMatrices/MRPMatrices.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/32allRerootings.gif
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+ application/octet-stream
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/AllRerootToolExtra.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/MakeRerootings.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/MakeRerootings/allRerootings.gif
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/ModTreesOtherSource/ModTreesOtherSource.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/NodeDepth/NodeDepth.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/NoiseToBranchLengths/NoiseToBranchLengths.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/OutgroupRoot/OutgroupRoot.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/ProbRndTreeModifier/ProbRndTreeModifier.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/RandomBranchMoves/RandomBranchMoves.class
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+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/RandomModifTree/RandomModifTree.class
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Added: svn:mime-type
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Added: trunk/treebase-core/lib/mesquite/treefarm/RandomResolve/RandomResolve.class
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+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/RandomlyModifiedTrees/RandomlyModifiedTrees.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/RarefyTree/RarefyTree.class
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+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/RearrangedTree/RearrangedTree.class
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+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/ReshuffleTaxa/ReshuffleTaxa.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/SharedClades2Trees/SharedClades2Trees.class
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Added: svn:mime-type
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Added: trunk/treebase-core/lib/mesquite/treefarm/SharedPartitions2Trees/SharedPartitions2Trees.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/TaxonValueFromTree/TaxonValueFromTree.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/TerminalInstability/TerminalInstability.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/TreeSatisfiesValue/TreeSatisfiesValue.class
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Added: svn:mime-type
+ application/octet-stream
Added: trunk/treebase-core/lib/mesquite/treefarm/TreeTotalPathLength/TreeTotalPath...
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