From: <rv...@us...> - 2009-12-16 10:52:46
|
Revision: 393 http://treebase.svn.sourceforge.net/treebase/?rev=393&view=rev Author: rvos Date: 2009-12-16 10:52:28 +0000 (Wed, 16 Dec 2009) Log Message: ----------- Adding mesquite classes Added Paths: ----------- trunk/treebase-core/lib/mesquite/jama/ trunk/treebase-core/lib/mesquite/jama/aJamaIntro/ trunk/treebase-core/lib/mesquite/jama/aJamaIntro/aJamaIntro.class trunk/treebase-core/lib/mesquite/jama/aJamaIntro/index.html trunk/treebase-core/lib/mesquite/jama/aJamaIntro/splash.gif trunk/treebase-core/lib/mesquite/jama/explanation.txt trunk/treebase-core/lib/mesquite/jsci/ trunk/treebase-core/lib/mesquite/jsci/aJSciIntro/ trunk/treebase-core/lib/mesquite/jsci/aJSciIntro/aJSciIntro.class trunk/treebase-core/lib/mesquite/jsci/aJSciIntro/index.html trunk/treebase-core/lib/mesquite/jsci/aJSciIntro/splash.gif trunk/treebase-core/lib/mesquite/jsci/explanation.txt trunk/treebase-core/lib/mesquite/lib/ trunk/treebase-core/lib/mesquite/lib/AImagePanel.class trunk/treebase-core/lib/mesquite/lib/ANTextField.class trunk/treebase-core/lib/mesquite/lib/Abortable.class trunk/treebase-core/lib/mesquite/lib/AdjustableTree.class trunk/treebase-core/lib/mesquite/lib/AlertDialog.class trunk/treebase-core/lib/mesquite/lib/AnnotPanelOwner.class trunk/treebase-core/lib/mesquite/lib/Annotatable.class trunk/treebase-core/lib/mesquite/lib/AnnotationsPanel.class trunk/treebase-core/lib/mesquite/lib/AntMarcher.class trunk/treebase-core/lib/mesquite/lib/Arguments.class trunk/treebase-core/lib/mesquite/lib/Associable.class trunk/treebase-core/lib/mesquite/lib/AssociableWithSpecs.class trunk/treebase-core/lib/mesquite/lib/Attachable.class trunk/treebase-core/lib/mesquite/lib/AttachedNote.class trunk/treebase-core/lib/mesquite/lib/AttachedNotesVector.class trunk/treebase-core/lib/mesquite/lib/Author.class trunk/treebase-core/lib/mesquite/lib/AutoSavedLister.class trunk/treebase-core/lib/mesquite/lib/BannerPanel.class trunk/treebase-core/lib/mesquite/lib/Binomial.class trunk/treebase-core/lib/mesquite/lib/Bits.class trunk/treebase-core/lib/mesquite/lib/BitsSpecsSet.class trunk/treebase-core/lib/mesquite/lib/ButtonWaitThread.class trunk/treebase-core/lib/mesquite/lib/CRecord.class trunk/treebase-core/lib/mesquite/lib/CardPanel.class trunk/treebase-core/lib/mesquite/lib/ChangeAuthority.class trunk/treebase-core/lib/mesquite/lib/ChangeEvent.class trunk/treebase-core/lib/mesquite/lib/ChangeHistory.class trunk/treebase-core/lib/mesquite/lib/ChartBkgdExtra.class trunk/treebase-core/lib/mesquite/lib/ChartExtra.class trunk/treebase-core/lib/mesquite/lib/ChartField.class trunk/treebase-core/lib/mesquite/lib/ChartListener.class trunk/treebase-core/lib/mesquite/lib/ChartScroll.class trunk/treebase-core/lib/mesquite/lib/ChartScrollPane.class trunk/treebase-core/lib/mesquite/lib/ChartTool.class trunk/treebase-core/lib/mesquite/lib/ChartWindow.class trunk/treebase-core/lib/mesquite/lib/Charter.class trunk/treebase-core/lib/mesquite/lib/ChecklistBox.class trunk/treebase-core/lib/mesquite/lib/ChecklistDialog.class trunk/treebase-core/lib/mesquite/lib/ChecklistScrollPane.class trunk/treebase-core/lib/mesquite/lib/CircleSymbol.class trunk/treebase-core/lib/mesquite/lib/Clade.class trunk/treebase-core/lib/mesquite/lib/Clades.class trunk/treebase-core/lib/mesquite/lib/ClassVector.class trunk/treebase-core/lib/mesquite/lib/ClockPanel.class trunk/treebase-core/lib/mesquite/lib/ColorDialog.class trunk/treebase-core/lib/mesquite/lib/ColorDistribution.class trunk/treebase-core/lib/mesquite/lib/ColorEvent.class trunk/treebase-core/lib/mesquite/lib/ColorEventVector.class trunk/treebase-core/lib/mesquite/lib/ColorPickerPanel.class trunk/treebase-core/lib/mesquite/lib/ColorRecord.class trunk/treebase-core/lib/mesquite/lib/Colorable.class trunk/treebase-core/lib/mesquite/lib/CommandChecker.class trunk/treebase-core/lib/mesquite/lib/CommandCommunicator.class trunk/treebase-core/lib/mesquite/lib/CommandRecord.class trunk/treebase-core/lib/mesquite/lib/CommandRecordHolder.class trunk/treebase-core/lib/mesquite/lib/CommandThread.class trunk/treebase-core/lib/mesquite/lib/Commandable.class trunk/treebase-core/lib/mesquite/lib/CommandableOwner.class trunk/treebase-core/lib/mesquite/lib/CompatibilityChecker.class trunk/treebase-core/lib/mesquite/lib/CompatibilityTest.class trunk/treebase-core/lib/mesquite/lib/ConsoleThread.class trunk/treebase-core/lib/mesquite/lib/ConsoleWindow.class trunk/treebase-core/lib/mesquite/lib/ContentArea.class trunk/treebase-core/lib/mesquite/lib/ContentLedgeContainer.class trunk/treebase-core/lib/mesquite/lib/ContentSideContainer.class trunk/treebase-core/lib/mesquite/lib/Context.class trunk/treebase-core/lib/mesquite/lib/ControlP.class trunk/treebase-core/lib/mesquite/lib/CurrentColorPanel.class trunk/treebase-core/lib/mesquite/lib/Debugg.class trunk/treebase-core/lib/mesquite/lib/DialogGraphicsPanel.class trunk/treebase-core/lib/mesquite/lib/DirFilenameFilter.class trunk/treebase-core/lib/mesquite/lib/Doomable.class trunk/treebase-core/lib/mesquite/lib/Double2DArray.class trunk/treebase-core/lib/mesquite/lib/DoubleArray.class trunk/treebase-core/lib/mesquite/lib/DoubleClickList.class trunk/treebase-core/lib/mesquite/lib/DoubleClickListener.class trunk/treebase-core/lib/mesquite/lib/DoubleField.class trunk/treebase-core/lib/mesquite/lib/DoubleMiniScroll.class trunk/treebase-core/lib/mesquite/lib/DoubleSliderWindow.class trunk/treebase-core/lib/mesquite/lib/DoubleSqMatrixFields.class trunk/treebase-core/lib/mesquite/lib/DragRectangle.class trunk/treebase-core/lib/mesquite/lib/ETContentArea.class trunk/treebase-core/lib/mesquite/lib/EmployeeNeed.class trunk/treebase-core/lib/mesquite/lib/EmployeeVector.class trunk/treebase-core/lib/mesquite/lib/EmployerEmployee.class trunk/treebase-core/lib/mesquite/lib/EnterButton.class trunk/treebase-core/lib/mesquite/lib/EnterTextField.class trunk/treebase-core/lib/mesquite/lib/Evaluator.class trunk/treebase-core/lib/mesquite/lib/ExplTextArea.class trunk/treebase-core/lib/mesquite/lib/Explainable.class trunk/treebase-core/lib/mesquite/lib/ExplanationArea.class trunk/treebase-core/lib/mesquite/lib/ExplanationControl.class trunk/treebase-core/lib/mesquite/lib/ExponentialDistribution.class trunk/treebase-core/lib/mesquite/lib/ExporterDialog.class trunk/treebase-core/lib/mesquite/lib/ExtensibleDialog$ConstrJEP.class trunk/treebase-core/lib/mesquite/lib/ExtensibleDialog.class trunk/treebase-core/lib/mesquite/lib/ExtensibleExplDialog.class trunk/treebase-core/lib/mesquite/lib/ExtensibleListDialog.class trunk/treebase-core/lib/mesquite/lib/FileBlock.class trunk/treebase-core/lib/mesquite/lib/FileDirtier.class trunk/treebase-core/lib/mesquite/lib/FileElement.class trunk/treebase-core/lib/mesquite/lib/FillableMesquiteSymbol.class trunk/treebase-core/lib/mesquite/lib/Fittable.class trunk/treebase-core/lib/mesquite/lib/FrameTabsPanel.class trunk/treebase-core/lib/mesquite/lib/FunctionExplainable.class trunk/treebase-core/lib/mesquite/lib/FunctionExplanation.class trunk/treebase-core/lib/mesquite/lib/GraphicsUtil.class trunk/treebase-core/lib/mesquite/lib/GroupLabel.class trunk/treebase-core/lib/mesquite/lib/HNode.class trunk/treebase-core/lib/mesquite/lib/HPanel.class trunk/treebase-core/lib/mesquite/lib/HSWindow.class trunk/treebase-core/lib/mesquite/lib/HTMLDescribable.class trunk/treebase-core/lib/mesquite/lib/HTMLSidePanel.class trunk/treebase-core/lib/mesquite/lib/HeaderPanel.class trunk/treebase-core/lib/mesquite/lib/HelpSearchManager$ManualPage.class trunk/treebase-core/lib/mesquite/lib/HelpSearchManager.class trunk/treebase-core/lib/mesquite/lib/HelpSearchStrip.class trunk/treebase-core/lib/mesquite/lib/HorizontalLine.class trunk/treebase-core/lib/mesquite/lib/Hyperlink.class trunk/treebase-core/lib/mesquite/lib/Identifiable.class trunk/treebase-core/lib/mesquite/lib/Illustratable.class trunk/treebase-core/lib/mesquite/lib/ImageHeaderPanel.class trunk/treebase-core/lib/mesquite/lib/ImageLabel.class trunk/treebase-core/lib/mesquite/lib/ImageOwner.class trunk/treebase-core/lib/mesquite/lib/ImagePanel.class trunk/treebase-core/lib/mesquite/lib/ImagePanelListener.class trunk/treebase-core/lib/mesquite/lib/Incrementable.class trunk/treebase-core/lib/mesquite/lib/InfoBar.class trunk/treebase-core/lib/mesquite/lib/InfoPanel.class trunk/treebase-core/lib/mesquite/lib/Integer2DArray.class trunk/treebase-core/lib/mesquite/lib/IntegerArray.class trunk/treebase-core/lib/mesquite/lib/IntegerField.class trunk/treebase-core/lib/mesquite/lib/IntegerSqMatrixFields.class trunk/treebase-core/lib/mesquite/lib/InterContentArea.class trunk/treebase-core/lib/mesquite/lib/Journal.class trunk/treebase-core/lib/mesquite/lib/KIListener.class trunk/treebase-core/lib/mesquite/lib/KeyAdapterToConsumeKeys.class trunk/treebase-core/lib/mesquite/lib/LabelsAtNodes.class trunk/treebase-core/lib/mesquite/lib/LeakFinder.class trunk/treebase-core/lib/mesquite/lib/Legend.class trunk/treebase-core/lib/mesquite/lib/LegendHolder.class trunk/treebase-core/lib/mesquite/lib/LightLabel.class trunk/treebase-core/lib/mesquite/lib/LightLabelsAtNodes.class trunk/treebase-core/lib/mesquite/lib/LinearValueToPixel.class trunk/treebase-core/lib/mesquite/lib/ListDialog.class trunk/treebase-core/lib/mesquite/lib/Listable.class trunk/treebase-core/lib/mesquite/lib/ListableVector.class trunk/treebase-core/lib/mesquite/lib/Listenable.class trunk/treebase-core/lib/mesquite/lib/Listened.class trunk/treebase-core/lib/mesquite/lib/LogValueToPixel.class trunk/treebase-core/lib/mesquite/lib/LogWindow.class trunk/treebase-core/lib/mesquite/lib/Logger.class trunk/treebase-core/lib/mesquite/lib/Long2DArray.class trunk/treebase-core/lib/mesquite/lib/LongArray.class trunk/treebase-core/lib/mesquite/lib/LongField.class trunk/treebase-core/lib/mesquite/lib/MDPHelperThread.class trunk/treebase-core/lib/mesquite/lib/MDPShowThread.class trunk/treebase-core/lib/mesquite/lib/MDPanel.class trunk/treebase-core/lib/mesquite/lib/MHTMLControl.class trunk/treebase-core/lib/mesquite/lib/MRPopup.class trunk/treebase-core/lib/mesquite/lib/MainThread.class trunk/treebase-core/lib/mesquite/lib/MarchingAnts.class trunk/treebase-core/lib/mesquite/lib/MenuItemsSpecsVector.class trunk/treebase-core/lib/mesquite/lib/MenuOwner.class trunk/treebase-core/lib/mesquite/lib/Mesquite3DIntPoint.class trunk/treebase-core/lib/mesquite/lib/MesquiteBoolean.class trunk/treebase-core/lib/mesquite/lib/MesquiteButton.class trunk/treebase-core/lib/mesquite/lib/MesquiteCMenuItemSpec.class trunk/treebase-core/lib/mesquite/lib/MesquiteChart.class trunk/treebase-core/lib/mesquite/lib/MesquiteCheckMenuItem.class trunk/treebase-core/lib/mesquite/lib/MesquiteColorTable.class trunk/treebase-core/lib/mesquite/lib/MesquiteCommand.class trunk/treebase-core/lib/mesquite/lib/MesquiteCursor.class trunk/treebase-core/lib/mesquite/lib/MesquiteDialog.class trunk/treebase-core/lib/mesquite/lib/MesquiteDialogParent.class trunk/treebase-core/lib/mesquite/lib/MesquiteDouble.class trunk/treebase-core/lib/mesquite/lib/MesquiteDroppedFileHandler.class trunk/treebase-core/lib/mesquite/lib/MesquiteEvent.class trunk/treebase-core/lib/mesquite/lib/MesquiteException.class trunk/treebase-core/lib/mesquite/lib/MesquiteFile.class trunk/treebase-core/lib/mesquite/lib/MesquiteFileDialog.class trunk/treebase-core/lib/mesquite/lib/MesquiteFrame$MWCE.class trunk/treebase-core/lib/mesquite/lib/MesquiteFrame$MWWE.class trunk/treebase-core/lib/mesquite/lib/MesquiteFrame.class trunk/treebase-core/lib/mesquite/lib/MesquiteHTMLWindow.class trunk/treebase-core/lib/mesquite/lib/MesquiteImage.class trunk/treebase-core/lib/mesquite/lib/MesquiteInteger.class trunk/treebase-core/lib/mesquite/lib/MesquiteLabel.class trunk/treebase-core/lib/mesquite/lib/MesquiteListTable.class trunk/treebase-core/lib/mesquite/lib/MesquiteListWindow.class trunk/treebase-core/lib/mesquite/lib/MesquiteListener.class trunk/treebase-core/lib/mesquite/lib/MesquiteLong.class trunk/treebase-core/lib/mesquite/lib/MesquiteMacro.class trunk/treebase-core/lib/mesquite/lib/MesquiteMenu.class trunk/treebase-core/lib/mesquite/lib/MesquiteMenuBar.class trunk/treebase-core/lib/mesquite/lib/MesquiteMenuItem.class trunk/treebase-core/lib/mesquite/lib/MesquiteMenuItemSpec.class trunk/treebase-core/lib/mesquite/lib/MesquiteMenuSpec.class trunk/treebase-core/lib/mesquite/lib/MesquiteMessage.class trunk/treebase-core/lib/mesquite/lib/MesquiteModule.class trunk/treebase-core/lib/mesquite/lib/MesquiteModuleInfo.class trunk/treebase-core/lib/mesquite/lib/MesquiteNumber.class trunk/treebase-core/lib/mesquite/lib/MesquitePDFFile.class trunk/treebase-core/lib/mesquite/lib/MesquitePackageRecord.class trunk/treebase-core/lib/mesquite/lib/MesquitePanel.class trunk/treebase-core/lib/mesquite/lib/MesquiteParameter.class trunk/treebase-core/lib/mesquite/lib/MesquitePopup.class trunk/treebase-core/lib/mesquite/lib/MesquitePrintJob$P2.class trunk/treebase-core/lib/mesquite/lib/MesquitePrintJob$P2Text.class trunk/treebase-core/lib/mesquite/lib/MesquitePrintJob.class trunk/treebase-core/lib/mesquite/lib/MesquiteProject.class trunk/treebase-core/lib/mesquite/lib/MesquiteScrollbar.class trunk/treebase-core/lib/mesquite/lib/MesquiteSet.class trunk/treebase-core/lib/mesquite/lib/MesquiteString.class trunk/treebase-core/lib/mesquite/lib/MesquiteSubmenu.class trunk/treebase-core/lib/mesquite/lib/MesquiteSubmenuSpec.class trunk/treebase-core/lib/mesquite/lib/MesquiteSymbol.class trunk/treebase-core/lib/mesquite/lib/MesquiteTextWindow.class trunk/treebase-core/lib/mesquite/lib/MesquiteThread.class trunk/treebase-core/lib/mesquite/lib/MesquiteTimer.class trunk/treebase-core/lib/mesquite/lib/MesquiteTool.class trunk/treebase-core/lib/mesquite/lib/MesquiteTree.class trunk/treebase-core/lib/mesquite/lib/MesquiteTrunk.class trunk/treebase-core/lib/mesquite/lib/MesquiteWindow.class trunk/treebase-core/lib/mesquite/lib/MesquiteXMLPreferencesModule.class trunk/treebase-core/lib/mesquite/lib/MesquiteXMLUtilities.class trunk/treebase-core/lib/mesquite/lib/MessagePanel.class trunk/treebase-core/lib/mesquite/lib/MiniControl.class trunk/treebase-core/lib/mesquite/lib/MiniNumberEditor.class trunk/treebase-core/lib/mesquite/lib/MiniScroll.class trunk/treebase-core/lib/mesquite/lib/MiniScrollButton.class trunk/treebase-core/lib/mesquite/lib/MiniSlider.class trunk/treebase-core/lib/mesquite/lib/MiniSliderWithText.class trunk/treebase-core/lib/mesquite/lib/MiniStringEditor.class trunk/treebase-core/lib/mesquite/lib/ModuleInfoWindow.class trunk/treebase-core/lib/mesquite/lib/ModulesInfoVector.class trunk/treebase-core/lib/mesquite/lib/MousePanel.class trunk/treebase-core/lib/mesquite/lib/MqFilterInputStream.class trunk/treebase-core/lib/mesquite/lib/NameReference.class trunk/treebase-core/lib/mesquite/lib/NexusBlock.class trunk/treebase-core/lib/mesquite/lib/NexusBlockEditableRaw.class trunk/treebase-core/lib/mesquite/lib/NexusBlockTest.class trunk/treebase-core/lib/mesquite/lib/NexusCommandTest.class trunk/treebase-core/lib/mesquite/lib/NexusWritable.class trunk/treebase-core/lib/mesquite/lib/Notification.class trunk/treebase-core/lib/mesquite/lib/NumSpecsSet.class trunk/treebase-core/lib/mesquite/lib/Number2DArray.class trunk/treebase-core/lib/mesquite/lib/NumberArray.class trunk/treebase-core/lib/mesquite/lib/Object2DArray.class trunk/treebase-core/lib/mesquite/lib/ObjectArray.class trunk/treebase-core/lib/mesquite/lib/ObjectContainer.class trunk/treebase-core/lib/mesquite/lib/ObjectR.class trunk/treebase-core/lib/mesquite/lib/ObjectSpecsSet.class trunk/treebase-core/lib/mesquite/lib/Optimizer.class trunk/treebase-core/lib/mesquite/lib/OuterContentArea.class trunk/treebase-core/lib/mesquite/lib/OutputFileProcessor.class trunk/treebase-core/lib/mesquite/lib/OwnedByModule.class trunk/treebase-core/lib/mesquite/lib/PanelOfCards.class trunk/treebase-core/lib/mesquite/lib/PanelsAtNodes.class trunk/treebase-core/lib/mesquite/lib/ParametersDialog.class trunk/treebase-core/lib/mesquite/lib/ParametersExplorable.class trunk/treebase-core/lib/mesquite/lib/ParseUtil.class trunk/treebase-core/lib/mesquite/lib/Parser.class trunk/treebase-core/lib/mesquite/lib/PathHolder.class trunk/treebase-core/lib/mesquite/lib/PendingCommand.class trunk/treebase-core/lib/mesquite/lib/PhoneHomeRecord.class trunk/treebase-core/lib/mesquite/lib/PhoneHomeUtil.class trunk/treebase-core/lib/mesquite/lib/PoCPanel.class trunk/treebase-core/lib/mesquite/lib/PopUpPanel.class trunk/treebase-core/lib/mesquite/lib/PopUpPanelOfCards.class trunk/treebase-core/lib/mesquite/lib/Prioritizable.class trunk/treebase-core/lib/mesquite/lib/Priority.class trunk/treebase-core/lib/mesquite/lib/ProgressIndicator.class trunk/treebase-core/lib/mesquite/lib/ProgressPanel.class trunk/treebase-core/lib/mesquite/lib/ProgressWindow.class trunk/treebase-core/lib/mesquite/lib/ProgressWindowThread.class trunk/treebase-core/lib/mesquite/lib/ProjectRead.class trunk/treebase-core/lib/mesquite/lib/ProjectReadThread.class trunk/treebase-core/lib/mesquite/lib/Projects.class trunk/treebase-core/lib/mesquite/lib/PropertyNamesProvider.class trunk/treebase-core/lib/mesquite/lib/PuppetThread.class trunk/treebase-core/lib/mesquite/lib/Puppeteer.class trunk/treebase-core/lib/mesquite/lib/QueryDialogs.class trunk/treebase-core/lib/mesquite/lib/RadioButtons.class trunk/treebase-core/lib/mesquite/lib/RandomBetween.class trunk/treebase-core/lib/mesquite/lib/Renamable.class trunk/treebase-core/lib/mesquite/lib/ResizableLegend.class trunk/treebase-core/lib/mesquite/lib/RotatedRectangle.class trunk/treebase-core/lib/mesquite/lib/ScrollTextField.class trunk/treebase-core/lib/mesquite/lib/Selectionable.class trunk/treebase-core/lib/mesquite/lib/ShellScriptUtil.class trunk/treebase-core/lib/mesquite/lib/ShellScriptWatcher.class trunk/treebase-core/lib/mesquite/lib/Short2DArray.class trunk/treebase-core/lib/mesquite/lib/ShortArray.class trunk/treebase-core/lib/mesquite/lib/Showable.class trunk/treebase-core/lib/mesquite/lib/SingleLineTextArea.class trunk/treebase-core/lib/mesquite/lib/SingleLineTextField.class trunk/treebase-core/lib/mesquite/lib/SliderWindow.class trunk/treebase-core/lib/mesquite/lib/Snapshot.class trunk/treebase-core/lib/mesquite/lib/SpecialListName.class trunk/treebase-core/lib/mesquite/lib/SpecsSet.class trunk/treebase-core/lib/mesquite/lib/SpecsSetVector.class trunk/treebase-core/lib/mesquite/lib/StreamGobbler.class trunk/treebase-core/lib/mesquite/lib/StringArray.class trunk/treebase-core/lib/mesquite/lib/StringInABox.class trunk/treebase-core/lib/mesquite/lib/StringIntegerDialog.class trunk/treebase-core/lib/mesquite/lib/StringIntegerListDlog.class trunk/treebase-core/lib/mesquite/lib/StringLister.class trunk/treebase-core/lib/mesquite/lib/StringUtil.class trunk/treebase-core/lib/mesquite/lib/SymbolGraphicsPanel.class trunk/treebase-core/lib/mesquite/lib/SymbolsVector.class trunk/treebase-core/lib/mesquite/lib/SystemWindow.class trunk/treebase-core/lib/mesquite/lib/TCMPanel.class trunk/treebase-core/lib/mesquite/lib/TDLegendWithColors.class trunk/treebase-core/lib/mesquite/lib/Taxa.class trunk/treebase-core/lib/mesquite/lib/TaxaBitsSet.class trunk/treebase-core/lib/mesquite/lib/TaxaBlock.class trunk/treebase-core/lib/mesquite/lib/TaxaDisplay.class trunk/treebase-core/lib/mesquite/lib/TaxaDisplayActive.class trunk/treebase-core/lib/mesquite/lib/TaxaDisplayBkgdExtra.class trunk/treebase-core/lib/mesquite/lib/TaxaDisplayDrawnExtra.class trunk/treebase-core/lib/mesquite/lib/TaxaDisplayExtra.class trunk/treebase-core/lib/mesquite/lib/TaxaDrawing.class trunk/treebase-core/lib/mesquite/lib/TaxaGroup.class trunk/treebase-core/lib/mesquite/lib/TaxaGroupVector.class trunk/treebase-core/lib/mesquite/lib/TaxaInclusionSet.class trunk/treebase-core/lib/mesquite/lib/TaxaPartition.class trunk/treebase-core/lib/mesquite/lib/TaxaSelectionSet.class trunk/treebase-core/lib/mesquite/lib/TaxaSpecsSet.class trunk/treebase-core/lib/mesquite/lib/TaxaStringsSet.class trunk/treebase-core/lib/mesquite/lib/TaxaTool.class trunk/treebase-core/lib/mesquite/lib/TaxaTreeDisplay.class trunk/treebase-core/lib/mesquite/lib/Taxon.class trunk/treebase-core/lib/mesquite/lib/TaxonPair.class trunk/treebase-core/lib/mesquite/lib/TaxonUtility.class trunk/treebase-core/lib/mesquite/lib/TextCanvas.class trunk/treebase-core/lib/mesquite/lib/TextContentArea.class trunk/treebase-core/lib/mesquite/lib/TextRotator.class trunk/treebase-core/lib/mesquite/lib/TextTree.class trunk/treebase-core/lib/mesquite/lib/ThermoPanel.class trunk/treebase-core/lib/mesquite/lib/ToolKeyListener.class trunk/treebase-core/lib/mesquite/lib/ToolPalette.class trunk/treebase-core/lib/mesquite/lib/TranslationTable.class trunk/treebase-core/lib/mesquite/lib/Tree.class trunk/treebase-core/lib/mesquite/lib/TreeContext.class trunk/treebase-core/lib/mesquite/lib/TreeContextListener.class trunk/treebase-core/lib/mesquite/lib/TreeDecorator.class trunk/treebase-core/lib/mesquite/lib/TreeDisplay.class trunk/treebase-core/lib/mesquite/lib/TreeDisplayActive.class trunk/treebase-core/lib/mesquite/lib/TreeDisplayBkgdExtra.class trunk/treebase-core/lib/mesquite/lib/TreeDisplayDrawnExtra.class trunk/treebase-core/lib/mesquite/lib/TreeDisplayExtra.class trunk/treebase-core/lib/mesquite/lib/TreeDisplayLegend.class trunk/treebase-core/lib/mesquite/lib/TreeDrawing.class trunk/treebase-core/lib/mesquite/lib/TreeReference.class trunk/treebase-core/lib/mesquite/lib/TreeTool.class trunk/treebase-core/lib/mesquite/lib/TreeUtil.class trunk/treebase-core/lib/mesquite/lib/TreeVector.class trunk/treebase-core/lib/mesquite/lib/Trees.class trunk/treebase-core/lib/mesquite/lib/TwoIntegersDialog.class trunk/treebase-core/lib/mesquite/lib/TwoStringsDialog.class trunk/treebase-core/lib/mesquite/lib/UndoInstructions.class trunk/treebase-core/lib/mesquite/lib/UndoReference.class trunk/treebase-core/lib/mesquite/lib/Undoer.class trunk/treebase-core/lib/mesquite/lib/ValueToPixel.class trunk/treebase-core/lib/mesquite/lib/WaitPanel.class trunk/treebase-core/lib/mesquite/lib/WindowButton.class trunk/treebase-core/lib/mesquite/lib/WithStringDetails.class trunk/treebase-core/lib/mesquite/lib/WizardInfoPanel.class trunk/treebase-core/lib/mesquite/lib/WorkaroundThread.class trunk/treebase-core/lib/mesquite/lib/ZipUtil.class trunk/treebase-core/lib/mesquite/lib/characters/ trunk/treebase-core/lib/mesquite/lib/characters/AdjustableDistribution.class trunk/treebase-core/lib/mesquite/lib/characters/CLikelihoodCalculator.class trunk/treebase-core/lib/mesquite/lib/characters/CModelEstimator.class trunk/treebase-core/lib/mesquite/lib/characters/CentralModelListener.class trunk/treebase-core/lib/mesquite/lib/characters/CharBitsSet.class trunk/treebase-core/lib/mesquite/lib/characters/CharHistoryContainer.class trunk/treebase-core/lib/mesquite/lib/characters/CharInclusionSet.class trunk/treebase-core/lib/mesquite/lib/characters/CharNumSet.class trunk/treebase-core/lib/mesquite/lib/characters/CharObjectSpecsSet.class trunk/treebase-core/lib/mesquite/lib/characters/CharSelectionSet.class trunk/treebase-core/lib/mesquite/lib/characters/CharSort.class trunk/treebase-core/lib/mesquite/lib/characters/CharSpecsSet.class trunk/treebase-core/lib/mesquite/lib/characters/CharWeightSet.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterData.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterDistribution.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterHistory.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterModel.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterPartition.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterState.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterStateTest.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterStates.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterStatesHolder.class trunk/treebase-core/lib/mesquite/lib/characters/CharacterSubmodel.class trunk/treebase-core/lib/mesquite/lib/characters/CharactersBlock.class trunk/treebase-core/lib/mesquite/lib/characters/CharactersGroup.class trunk/treebase-core/lib/mesquite/lib/characters/CharactersGroupVector.class trunk/treebase-core/lib/mesquite/lib/characters/CodonPositionsSet.class trunk/treebase-core/lib/mesquite/lib/characters/DefaultReference.class trunk/treebase-core/lib/mesquite/lib/characters/MAdjustableDistribution.class trunk/treebase-core/lib/mesquite/lib/characters/MCharactersDistribution.class trunk/treebase-core/lib/mesquite/lib/characters/MCharactersHistory.class trunk/treebase-core/lib/mesquite/lib/characters/MCharactersStates.class trunk/treebase-core/lib/mesquite/lib/characters/MCharactersStatesHolder.class trunk/treebase-core/lib/mesquite/lib/characters/ModelCompatibilityInfo.class trunk/treebase-core/lib/mesquite/lib/characters/ModelSet.class trunk/treebase-core/lib/mesquite/lib/characters/ModelVector.class trunk/treebase-core/lib/mesquite/lib/characters/ProbabilityModel.class trunk/treebase-core/lib/mesquite/lib/characters/ProbabilityModelSet.class trunk/treebase-core/lib/mesquite/lib/characters/SlicedCharacterHistory.class trunk/treebase-core/lib/mesquite/lib/characters/StoredCharacterHistory.class trunk/treebase-core/lib/mesquite/lib/characters/TaxaInfo.class trunk/treebase-core/lib/mesquite/lib/characters/WholeCharacterModel.class trunk/treebase-core/lib/mesquite/lib/duties/ trunk/treebase-core/lib/mesquite/lib/duties/AnalyticalDrawTree.class trunk/treebase-core/lib/mesquite/lib/duties/BooleanForCharacter.class trunk/treebase-core/lib/mesquite/lib/duties/BooleanForItem.class trunk/treebase-core/lib/mesquite/lib/duties/BooleanForTaxon.class trunk/treebase-core/lib/mesquite/lib/duties/BooleanForTree.class trunk/treebase-core/lib/mesquite/lib/duties/BooleanForTreeIncr.class trunk/treebase-core/lib/mesquite/lib/duties/BooleanForTreeM.class trunk/treebase-core/lib/mesquite/lib/duties/BranchLengthsAlterer.class trunk/treebase-core/lib/mesquite/lib/duties/BranchLengthsAltererMult.class trunk/treebase-core/lib/mesquite/lib/duties/BrowseHierarchy.class trunk/treebase-core/lib/mesquite/lib/duties/CellColorer.class trunk/treebase-core/lib/mesquite/lib/duties/CharHistorySource.class trunk/treebase-core/lib/mesquite/lib/duties/CharMapper.class trunk/treebase-core/lib/mesquite/lib/duties/CharMatrixFiller.class trunk/treebase-core/lib/mesquite/lib/duties/CharMatrixManager.class trunk/treebase-core/lib/mesquite/lib/duties/CharMatrixObedSource.class trunk/treebase-core/lib/mesquite/lib/duties/CharMatrixOneSource.class trunk/treebase-core/lib/mesquite/lib/duties/CharMatrixSource.class trunk/treebase-core/lib/mesquite/lib/duties/CharModelCurator.class trunk/treebase-core/lib/mesquite/lib/duties/CharSelectCoordinator.class trunk/treebase-core/lib/mesquite/lib/duties/CharSourceCoord.class trunk/treebase-core/lib/mesquite/lib/duties/CharSourceCoordObed.class trunk/treebase-core/lib/mesquite/lib/duties/CharSpecsSetManager.class trunk/treebase-core/lib/mesquite/lib/duties/CharStatesForNodes.class trunk/treebase-core/lib/mesquite/lib/duties/CharSubmodelCurator.class trunk/treebase-core/lib/mesquite/lib/duties/CharTableAssistantI.class trunk/treebase-core/lib/mesquite/lib/duties/CharacterModelSource.class trunk/treebase-core/lib/mesquite/lib/duties/CharacterObedSource.class trunk/treebase-core/lib/mesquite/lib/duties/CharacterOneSource.class trunk/treebase-core/lib/mesquite/lib/duties/CharacterSelector.class trunk/treebase-core/lib/mesquite/lib/duties/CharacterSimulator.class trunk/treebase-core/lib/mesquite/lib/duties/CharacterSource.class trunk/treebase-core/lib/mesquite/lib/duties/CharactersManager.class trunk/treebase-core/lib/mesquite/lib/duties/CharsStatesForNodes.class trunk/treebase-core/lib/mesquite/lib/duties/ChartAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/Consenser.class trunk/treebase-core/lib/mesquite/lib/duties/CuratorWithSettings.class trunk/treebase-core/lib/mesquite/lib/duties/DataAlterer.class trunk/treebase-core/lib/mesquite/lib/duties/DataAltererCon.class trunk/treebase-core/lib/mesquite/lib/duties/DataColumnNamesAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/DataMatcher.class trunk/treebase-core/lib/mesquite/lib/duties/DataSearcher.class trunk/treebase-core/lib/mesquite/lib/duties/DataUtility.class trunk/treebase-core/lib/mesquite/lib/duties/DataWSelectionAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/DataWindowAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/DataWindowAssistantA.class trunk/treebase-core/lib/mesquite/lib/duties/DataWindowAssistantI.class trunk/treebase-core/lib/mesquite/lib/duties/DataWindowMaker.class trunk/treebase-core/lib/mesquite/lib/duties/DefaultsAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/DisplayCharsStsAtNodes.class trunk/treebase-core/lib/mesquite/lib/duties/DisplayNumbersAtNodes.class trunk/treebase-core/lib/mesquite/lib/duties/DisplayStatesAtNodes.class trunk/treebase-core/lib/mesquite/lib/duties/DistanceBetween2Trees.class trunk/treebase-core/lib/mesquite/lib/duties/DrawChart.class trunk/treebase-core/lib/mesquite/lib/duties/DrawNamesTaxaDisplay.class trunk/treebase-core/lib/mesquite/lib/duties/DrawNamesTreeDisplay.class trunk/treebase-core/lib/mesquite/lib/duties/DrawTaxa.class trunk/treebase-core/lib/mesquite/lib/duties/DrawTaxaCoordinator.class trunk/treebase-core/lib/mesquite/lib/duties/DrawTree.class trunk/treebase-core/lib/mesquite/lib/duties/DrawTreeCoordinator.class trunk/treebase-core/lib/mesquite/lib/duties/EditRawNexusBlock.class trunk/treebase-core/lib/mesquite/lib/duties/EditingCurator.class trunk/treebase-core/lib/mesquite/lib/duties/ElementManager.class trunk/treebase-core/lib/mesquite/lib/duties/EmployeeTree.class trunk/treebase-core/lib/mesquite/lib/duties/ExternalTreeSearcher.class trunk/treebase-core/lib/mesquite/lib/duties/FileAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/FileAssistantC.class trunk/treebase-core/lib/mesquite/lib/duties/FileAssistantCH.class trunk/treebase-core/lib/mesquite/lib/duties/FileAssistantCP.class trunk/treebase-core/lib/mesquite/lib/duties/FileAssistantCS.class trunk/treebase-core/lib/mesquite/lib/duties/FileAssistantN.class trunk/treebase-core/lib/mesquite/lib/duties/FileAssistantT.class trunk/treebase-core/lib/mesquite/lib/duties/FileCoordinator.class trunk/treebase-core/lib/mesquite/lib/duties/FileElementManager.class trunk/treebase-core/lib/mesquite/lib/duties/FileInit.class trunk/treebase-core/lib/mesquite/lib/duties/FileInitEarlyLoad.class trunk/treebase-core/lib/mesquite/lib/duties/FileInterpreter.class trunk/treebase-core/lib/mesquite/lib/duties/FileInterpreterI.class trunk/treebase-core/lib/mesquite/lib/duties/FileInterpreterITree.class trunk/treebase-core/lib/mesquite/lib/duties/GeneralFileMaker.class trunk/treebase-core/lib/mesquite/lib/duties/HistogramAssistantA.class trunk/treebase-core/lib/mesquite/lib/duties/ItemsBiplotter.class trunk/treebase-core/lib/mesquite/lib/duties/ItemsCharter.class trunk/treebase-core/lib/mesquite/lib/duties/ItemsSource.class trunk/treebase-core/lib/mesquite/lib/duties/ManageModelSet.class trunk/treebase-core/lib/mesquite/lib/duties/ManagerAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/MatrixCharter.class trunk/treebase-core/lib/mesquite/lib/duties/MatrixSourceCoord.class trunk/treebase-core/lib/mesquite/lib/duties/MatrixSourceCoordObed.class trunk/treebase-core/lib/mesquite/lib/duties/MesquiteInit.class trunk/treebase-core/lib/mesquite/lib/duties/ModelsetNexusCommandTest.class trunk/treebase-core/lib/mesquite/lib/duties/NexusFileInterpreter.class trunk/treebase-core/lib/mesquite/lib/duties/NodeChooser.class trunk/treebase-core/lib/mesquite/lib/duties/NodeLocs.class trunk/treebase-core/lib/mesquite/lib/duties/NodeLocsCircle.class trunk/treebase-core/lib/mesquite/lib/duties/NodeLocsFree.class trunk/treebase-core/lib/mesquite/lib/duties/NodeLocsPlot.class trunk/treebase-core/lib/mesquite/lib/duties/NodeLocsVH.class trunk/treebase-core/lib/mesquite/lib/duties/NumFor2CharHistAndTree.class trunk/treebase-core/lib/mesquite/lib/duties/NumForCharHistAndTree.class trunk/treebase-core/lib/mesquite/lib/duties/NumForCharTreeDep.class trunk/treebase-core/lib/mesquite/lib/duties/NumForCharTreeIndep.class trunk/treebase-core/lib/mesquite/lib/duties/NumberFor2CharAndTree.class trunk/treebase-core/lib/mesquite/lib/duties/NumberFor2Characters.class trunk/treebase-core/lib/mesquite/lib/duties/NumberFor2Taxa.class trunk/treebase-core/lib/mesquite/lib/duties/NumberFor2TaxaIncr.class trunk/treebase-core/lib/mesquite/lib/duties/NumberFor2Trees.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForCharAndTaxon.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForCharAndTree.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForCharAndTreeM.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForCharacter.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForCharacterIncr.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForItem.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForMatrix.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForMatrixAndTree.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForNode.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForTaxon.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForTaxonIncr.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForTree.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForTreeBlock.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForTreeIncr.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForTreeM.class trunk/treebase-core/lib/mesquite/lib/duties/NumberForTreeWContext.class trunk/treebase-core/lib/mesquite/lib/duties/NumbersForNodes.class trunk/treebase-core/lib/mesquite/lib/duties/NumbersForNodesAndChar.class trunk/treebase-core/lib/mesquite/lib/duties/NumbersForNodesAndHistory.class trunk/treebase-core/lib/mesquite/lib/duties/NumbersForNodesAndMatrix.class trunk/treebase-core/lib/mesquite/lib/duties/NumbersForNodesIncr.class trunk/treebase-core/lib/mesquite/lib/duties/NumbersForNodesWith2Char.class trunk/treebase-core/lib/mesquite/lib/duties/OneTreeSource.class trunk/treebase-core/lib/mesquite/lib/duties/PackageIntro.class trunk/treebase-core/lib/mesquite/lib/duties/PackageIntroInterface.class trunk/treebase-core/lib/mesquite/lib/duties/ParametersExplorer.class trunk/treebase-core/lib/mesquite/lib/duties/ReadFileFromString.class trunk/treebase-core/lib/mesquite/lib/duties/ScattergramAssistantA.class trunk/treebase-core/lib/mesquite/lib/duties/ScriptingManager.class trunk/treebase-core/lib/mesquite/lib/duties/SpecsSetManager.class trunk/treebase-core/lib/mesquite/lib/duties/TSrcCompatibilityTest.class trunk/treebase-core/lib/mesquite/lib/duties/TWindowMaker.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaDisplayAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaDisplayAssistantA.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaDisplayAssistantAD.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaDisplayAssistantD.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaDisplayAssistantDI.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaDisplayAssistantI.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaDisplayAssistantMA.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaManager.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaPartitionSource.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaSelectCoordinator.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaSource.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaTableAssistantI.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaWindowAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaWindowAssistantC.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaWindowAssistantI.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaWindowAssistantN.class trunk/treebase-core/lib/mesquite/lib/duties/TaxaWindowMaker.class trunk/treebase-core/lib/mesquite/lib/duties/TaxonNameAlterer.class trunk/treebase-core/lib/mesquite/lib/duties/TaxonPairSource.class trunk/treebase-core/lib/mesquite/lib/duties/TaxonSelector.class trunk/treebase-core/lib/mesquite/lib/duties/TaxonSource.class trunk/treebase-core/lib/mesquite/lib/duties/TextDisplayer.class trunk/treebase-core/lib/mesquite/lib/duties/TraceCharacterInit.class trunk/treebase-core/lib/mesquite/lib/duties/TreeAlterer.class trunk/treebase-core/lib/mesquite/lib/duties/TreeAltererMult.class trunk/treebase-core/lib/mesquite/lib/duties/TreeBlockFiller.class trunk/treebase-core/lib/mesquite/lib/duties/TreeBlockSource.class trunk/treebase-core/lib/mesquite/lib/duties/TreeDisplayAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/TreeDisplayAssistantA.class trunk/treebase-core/lib/mesquite/lib/duties/TreeDisplayAssistantAD.class trunk/treebase-core/lib/mesquite/lib/duties/TreeDisplayAssistantAO.class trunk/treebase-core/lib/mesquite/lib/duties/TreeDisplayAssistantD.class trunk/treebase-core/lib/mesquite/lib/duties/TreeDisplayAssistantDI.class trunk/treebase-core/lib/mesquite/lib/duties/TreeDisplayAssistantI.class trunk/treebase-core/lib/mesquite/lib/duties/TreeDisplayAssistantMA.class trunk/treebase-core/lib/mesquite/lib/duties/TreeInferer.class trunk/treebase-core/lib/mesquite/lib/duties/TreeSearcher.class trunk/treebase-core/lib/mesquite/lib/duties/TreeSimulate.class trunk/treebase-core/lib/mesquite/lib/duties/TreeSource.class trunk/treebase-core/lib/mesquite/lib/duties/TreeSourceDefinite.class trunk/treebase-core/lib/mesquite/lib/duties/TreeSwapper.class trunk/treebase-core/lib/mesquite/lib/duties/TreeTransformer.class trunk/treebase-core/lib/mesquite/lib/duties/TreeTransformerMult.class trunk/treebase-core/lib/mesquite/lib/duties/TreeUtility.class trunk/treebase-core/lib/mesquite/lib/duties/TreeWindowAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/TreeWindowAssistantA.class trunk/treebase-core/lib/mesquite/lib/duties/TreeWindowAssistantC.class trunk/treebase-core/lib/mesquite/lib/duties/TreeWindowAssistantI.class trunk/treebase-core/lib/mesquite/lib/duties/TreeWindowAssistantN.class trunk/treebase-core/lib/mesquite/lib/duties/TreeWindowMaker.class trunk/treebase-core/lib/mesquite/lib/duties/TreesManager.class trunk/treebase-core/lib/mesquite/lib/duties/UtilitiesAssistant.class trunk/treebase-core/lib/mesquite/lib/duties/WholeCharModelCurator.class trunk/treebase-core/lib/mesquite/lib/duties/WindowHolder.class trunk/treebase-core/lib/mesquite/lib/system/ trunk/treebase-core/lib/mesquite/lib/system/SystemUtil.class trunk/treebase-core/lib/mesquite/lib/table/ trunk/treebase-core/lib/mesquite/lib/table/AutoScrollThread.class trunk/treebase-core/lib/mesquite/lib/table/CMTable.class trunk/treebase-core/lib/mesquite/lib/table/ColumnNamesPanel.class trunk/treebase-core/lib/mesquite/lib/table/ControlStrip.class trunk/treebase-core/lib/mesquite/lib/table/CornerPanel.class trunk/treebase-core/lib/mesquite/lib/table/EditorPanel.class trunk/treebase-core/lib/mesquite/lib/table/EditorTextField$FListener.class trunk/treebase-core/lib/mesquite/lib/table/EditorTextField$KListener.class trunk/treebase-core/lib/mesquite/lib/table/EditorTextField.class trunk/treebase-core/lib/mesquite/lib/table/MatrixPanel.class trunk/treebase-core/lib/mesquite/lib/table/MesquiteTable.class trunk/treebase-core/lib/mesquite/lib/table/RowNamesPanel.class trunk/treebase-core/lib/mesquite/lib/table/TableMarchingAnts.class trunk/treebase-core/lib/mesquite/lib/table/TableScroll.class trunk/treebase-core/lib/mesquite/lib/table/TableTool.class trunk/treebase-core/lib/mesquite/lib/table/TableWindow.class trunk/treebase-core/lib/mesquite/lists/ trunk/treebase-core/lib/mesquite/lists/BooleanForCharList/ trunk/treebase-core/lib/mesquite/lists/BooleanForCharList/BooleanForCharList.class trunk/treebase-core/lib/mesquite/lists/BooleanForTreeList/ trunk/treebase-core/lib/mesquite/lists/BooleanForTreeList/BooleanForTreeList.class trunk/treebase-core/lib/mesquite/lists/CharInclSetList/ trunk/treebase-core/lib/mesquite/lists/CharInclSetList/CharInclSetList.class trunk/treebase-core/lib/mesquite/lists/CharInclSetListNum/ trunk/treebase-core/lib/mesquite/lists/CharInclSetListNum/CharInclSetListNum.class trunk/treebase-core/lib/mesquite/lists/CharListAnnotPanel/ trunk/treebase-core/lib/mesquite/lists/CharListAnnotPanel/CharListAnnotPanel.class trunk/treebase-core/lib/mesquite/lists/CharListCodonPos/ trunk/treebase-core/lib/mesquite/lists/CharListCodonPos/CharListCodonPos.class trunk/treebase-core/lib/mesquite/lists/CharListInclusion/ trunk/treebase-core/lib/mesquite/lists/CharListInclusion/CharListInclusion.class trunk/treebase-core/lib/mesquite/lists/CharListPartition/ trunk/treebase-core/lib/mesquite/lists/CharListPartition/CharListPartition.class trunk/treebase-core/lib/mesquite/lists/CharListUniqueID/ trunk/treebase-core/lib/mesquite/lists/CharListUniqueID/CharListUniqueID.class trunk/treebase-core/lib/mesquite/lists/CharListWeights/ trunk/treebase-core/lib/mesquite/lists/CharListWeights/CharListWeights.class trunk/treebase-core/lib/mesquite/lists/CharNumForList/ trunk/treebase-core/lib/mesquite/lists/CharNumForList/CharNumForList.class trunk/treebase-core/lib/mesquite/lists/CharPartitionList/ trunk/treebase-core/lib/mesquite/lists/CharPartitionList/CharPartitionList.class trunk/treebase-core/lib/mesquite/lists/CharSetList/ trunk/treebase-core/lib/mesquite/lists/CharSetList/CharSetList.class trunk/treebase-core/lib/mesquite/lists/CharSetListNum/ trunk/treebase-core/lib/mesquite/lists/CharSetListNum/CharSetListNum.class trunk/treebase-core/lib/mesquite/lists/CharacterList/ trunk/treebase-core/lib/mesquite/lists/CharacterList/CharacterList.class trunk/treebase-core/lib/mesquite/lists/CharacterList/CharacterListWindow.class trunk/treebase-core/lib/mesquite/lists/CharacterStats/ trunk/treebase-core/lib/mesquite/lists/CharacterStats/CharacterStats.class trunk/treebase-core/lib/mesquite/lists/CodePosSetsList/ trunk/treebase-core/lib/mesquite/lists/CodePosSetsList/CodePosSetsList.class trunk/treebase-core/lib/mesquite/lists/DatasetList/ trunk/treebase-core/lib/mesquite/lists/DatasetList/DatasetList.class trunk/treebase-core/lib/mesquite/lists/DatasetsListClass/ trunk/treebase-core/lib/mesquite/lists/DatasetsListClass/DatasetsListClass.class trunk/treebase-core/lib/mesquite/lists/DatasetsListNumChars/ trunk/treebase-core/lib/mesquite/lists/DatasetsListNumChars/DatasetsListNumChars.class trunk/treebase-core/lib/mesquite/lists/DatasetsListTaxa/ trunk/treebase-core/lib/mesquite/lists/DatasetsListTaxa/DatasetsListTaxa.class trunk/treebase-core/lib/mesquite/lists/DefaultCharOrder/ trunk/treebase-core/lib/mesquite/lists/DefaultCharOrder/DefaultCharOrder.class trunk/treebase-core/lib/mesquite/lists/DefaultTaxaOrder/ trunk/treebase-core/lib/mesquite/lists/DefaultTaxaOrder/DefaultTaxaOrder.class trunk/treebase-core/lib/mesquite/lists/ModelsList/ trunk/treebase-core/lib/mesquite/lists/ModelsList/ModelsList.class trunk/treebase-core/lib/mesquite/lists/ModelsList/ModelsListWindow.class trunk/treebase-core/lib/mesquite/lists/ModelsListDatatype/ trunk/treebase-core/lib/mesquite/lists/ModelsListDatatype/ModelsListDatatype.class trunk/treebase-core/lib/mesquite/lists/ModelsListParadigm/ trunk/treebase-core/lib/mesquite/lists/ModelsListParadigm/ModelsListParadigm.class trunk/treebase-core/lib/mesquite/lists/ModelsListType/ trunk/treebase-core/lib/mesquite/lists/ModelsListType/ModelsListType.class trunk/treebase-core/lib/mesquite/lists/ModelsListWhole/ trunk/treebase-core/lib/mesquite/lists/ModelsListWhole/ModelsListWhole.class trunk/treebase-core/lib/mesquite/lists/NexusBlockList/ trunk/treebase-core/lib/mesquite/lists/NexusBlockList/NexusBlockList.class trunk/treebase-core/lib/mesquite/lists/NumForCharMatrixList/ trunk/treebase-core/lib/mesquite/lists/NumForCharMatrixList/NumForCharMatrixList.class trunk/treebase-core/lib/mesquite/lists/NumForTaxaList/ trunk/treebase-core/lib/mesquite/lists/NumForTaxaList/NumForTaxaList.class trunk/treebase-core/lib/mesquite/lists/NumForTreeList/ trunk/treebase-core/lib/mesquite/lists/NumForTreeList/NumForTreeList.class trunk/treebase-core/lib/mesquite/lists/NumForTreeblockList/ trunk/treebase-core/lib/mesquite/lists/NumForTreeblockList/NumForTreeblockList.class trunk/treebase-core/lib/mesquite/lists/TaxaListUniqueID/ trunk/treebase-core/lib/mesquite/lists/TaxaListUniqueID/TaxaListUniqueID.class trunk/treebase-core/lib/mesquite/lists/TaxaPartListNumGroups/ trunk/treebase-core/lib/mesquite/lists/TaxaPartListNumGroups/TaxaPartListNumGroups.class trunk/treebase-core/lib/mesquite/lists/TaxaPartitionList/ trunk/treebase-core/lib/mesquite/lists/TaxaPartitionList/TaxaPartitionList.class trunk/treebase-core/lib/mesquite/lists/TaxaSetListNum/ trunk/treebase-core/lib/mesquite/lists/TaxaSetListNum/TaxaSetListNum.class trunk/treebase-core/lib/mesquite/lists/TaxablockList/ trunk/treebase-core/lib/mesquite/lists/TaxablockList/TaxablockList.class trunk/treebase-core/lib/mesquite/lists/TaxablockListNumber/ trunk/treebase-core/lib/mesquite/lists/TaxablockListNumber/TaxablockListNumber.class trunk/treebase-core/lib/mesquite/lists/TaxonList/ trunk/treebase-core/lib/mesquite/lists/TaxonList/TaxonList.class trunk/treebase-core/lib/mesquite/lists/TaxonList/TaxonListWindow.class trunk/treebase-core/lib/mesquite/lists/TaxonListAnnotPanel/ trunk/treebase-core/lib/mesquite/lists/TaxonListAnnotPanel/TaxonListAnnotPanel.class trunk/treebase-core/lib/mesquite/lists/TaxonListArchivedName/ trunk/treebase-core/lib/mesquite/lists/TaxonListArchivedName/TaxonListArchivedName.class trunk/treebase-core/lib/mesquite/lists/TaxonListCurrPartition/ trunk/treebase-core/lib/mesquite/lists/TaxonListCurrPartition/TaxonListCurrPartition.class trunk/treebase-core/lib/mesquite/lists/TaxonSetList/ trunk/treebase-core/lib/mesquite/lists/TaxonSetList/TaxonSetList.class trunk/treebase-core/lib/mesquite/lists/TreeListAttachment/ trunk/treebase-core/lib/mesquite/lists/TreeListAttachment/TreeListAttachment.class trunk/treebase-core/lib/mesquite/lists/TreeListPolyAssumption/ trunk/treebase-core/lib/mesquite/lists/TreeListPolyAssumption/TreeListPolyAssumption.class trunk/treebase-core/lib/mesquite/lists/TreeListPolys/ trunk/treebase-core/lib/mesquite/lists/TreeListPolys/TreeListPolys.class trunk/treebase-core/lib/mesquite/lists/TreeListRooted/ trunk/treebase-core/lib/mesquite/lists/TreeListRooted/TreeListRooted.class trunk/treebase-core/lib/mesquite/lists/TreeblockList/ trunk/treebase-core/lib/mesquite/lists/TreeblockList/TreeblockList.class trunk/treebase-core/lib/mesquite/lists/TreeblocksListNumber/ trunk/treebase-core/lib/mesquite/lists/TreeblocksListNumber/TreeblocksListNumber.class trunk/treebase-core/lib/mesquite/lists/TreeblocksListTaxa/ trunk/treebase-core/lib/mesquite/lists/TreeblocksListTaxa/TreeblocksListTaxa.class trunk/treebase-core/lib/mesquite/lists/TreesList/ trunk/treebase-core/lib/mesquite/lists/TreesList/TreesList.class trunk/treebase-core/lib/mesquite/lists/TreesList/TreesListWindow.class trunk/treebase-core/lib/mesquite/lists/WeightSetList/ trunk/treebase-core/lib/mesquite/lists/WeightSetList/WeightSetList.class trunk/treebase-core/lib/mesquite/lists/explanation.txt trunk/treebase-core/lib/mesquite/lists/lib/ trunk/treebase-core/lib/mesquite/lists/lib/CharInclSetListAsst.class trunk/treebase-core/lib/mesquite/lists/lib/CharListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/CharListAssistantI.class trunk/treebase-core/lib/mesquite/lists/lib/CharListModel.class trunk/treebase-core/lib/mesquite/lists/lib/CharListPartitionUtil.class trunk/treebase-core/lib/mesquite/lists/lib/CharSetListAsst.class trunk/treebase-core/lib/mesquite/lists/lib/DataSetsListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/DataSpecsListWindow.class trunk/treebase-core/lib/mesquite/lists/lib/DataSpecssetList.class trunk/treebase-core/lib/mesquite/lists/lib/DatasetsListUtility.class trunk/treebase-core/lib/mesquite/lists/lib/GroupDialog.class trunk/treebase-core/lib/mesquite/lists/lib/LTCellAnnotation.class trunk/treebase-core/lib/mesquite/lists/lib/ListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/ListLVModule.class trunk/treebase-core/lib/mesquite/lists/lib/ListModule.class trunk/treebase-core/lib/mesquite/lists/lib/ListTable.class trunk/treebase-core/lib/mesquite/lists/lib/ListWindow.class trunk/treebase-core/lib/mesquite/lists/lib/ListableVectorWindow.class trunk/treebase-core/lib/mesquite/lists/lib/ModelSetListAsst.class trunk/treebase-core/lib/mesquite/lists/lib/ModelsListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/TaxaBlocksListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/TaxaBlocksListUtility.class trunk/treebase-core/lib/mesquite/lists/lib/TaxaListAssistantI.class trunk/treebase-core/lib/mesquite/lists/lib/TaxaPartListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/TaxaSetListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/TaxaSpecsListWindow.class trunk/treebase-core/lib/mesquite/lists/lib/TaxaSpecssetList.class trunk/treebase-core/lib/mesquite/lists/lib/TaxonListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/TreeBlockListUtility.class trunk/treebase-core/lib/mesquite/lists/lib/TreeListAssistant.class trunk/treebase-core/lib/mesquite/lists/lib/TreeListUtility.class trunk/treebase-core/lib/mesquite/lists/lib/TreeblocksListAssistant.class trunk/treebase-core/lib/mesquite/mb/ trunk/treebase-core/lib/mesquite/mb/BestBayesTree/ trunk/treebase-core/lib/mesquite/mb/BestBayesTree/BestBayesTree.class trunk/treebase-core/lib/mesquite/mb/ExportForMrBayes/ trunk/treebase-core/lib/mesquite/mb/ExportForMrBayes/ExportForMrBayes.class trunk/treebase-core/lib/mesquite/mb/MrBayesScore/ trunk/treebase-core/lib/mesquite/mb/MrBayesScore/MrBayesScore.class trunk/treebase-core/lib/mesquite/mb/TreesFromMrBayes/ trunk/treebase-core/lib/mesquite/mb/TreesFromMrBayes/TreesFromMrBayes.class trunk/treebase-core/lib/mesquite/minimal/ trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/ trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/BasicFileCoordinator.class trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/BasicPanel.class trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/FileRead.class trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/ProjectWindow.class trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/index.html trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/splash.gif trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/splash.gif copy trunk/treebase-core/lib/mesquite/minimal/BasicFileCoordinator/splashSmall.gif trunk/treebase-core/lib/mesquite/minimal/Defaults/ trunk/treebase-core/lib/mesquite/minimal/Defaults/Defaults.class trunk/treebase-core/lib/mesquite/minimal/DrawHierarchy/ trunk/treebase-core/lib/mesquite/minimal/DrawHierarchy/DrawHierarchy.class trunk/treebase-core/lib/mesquite/minimal/DrawHierarchy/FieldPanel.class trunk/treebase-core/lib/mesquite/minimal/DrawHierarchy/HierarchyPanel.class trunk/treebase-core/lib/mesquite/minimal/DrawHierarchy/NodeLabel.class trunk/treebase-core/lib/mesquite/minimal/DrawHierarchy/SupplementLabel.class trunk/treebase-core/lib/mesquite/minimal/IDsDefaults/ trunk/treebase-core/lib/mesquite/minimal/IDsDefaults/IDsDefaults.class trunk/treebase-core/lib/mesquite/minimal/InterpretNEXUS/ trunk/treebase-core/lib/mesquite/minimal/InterpretNEXUS/InterpretNEXUS.class trunk/treebase-core/lib/mesquite/minimal/ManageForeignBlocks/ trunk/treebase-core/lib/mesquite/minimal/ManageForeignBlocks/ForeignBlock.class trunk/treebase-core/lib/mesquite/minimal/ManageForeignBlocks/ManageForeignBlocks.class trunk/treebase-core/lib/mesquite/minimal/ManageMesquiteBlock/ trunk/treebase-core/lib/mesquite/minimal/ManageMesquiteBlock/ManageMesquiteBlock.class trunk/treebase-core/lib/mesquite/minimal/ManageMesquiteBlock/MesquiteBlock.class trunk/treebase-core/lib/mesquite/minimal/ManageMesquiteBlock/MesquiteBlockTest.class trunk/treebase-core/lib/mesquite/minimal/ManageTaxa/ trunk/treebase-core/lib/mesquite/minimal/ManageTaxa/ManageTaxa.class trunk/treebase-core/lib/mesquite/minimal/ManageTaxa/TAXANexusCommandTest.class trunk/treebase-core/lib/mesquite/minimal/ManageTaxa/TaxaBlockTest.class trunk/treebase-core/lib/mesquite/minimal/NEXUSDefaults/ trunk/treebase-core/lib/mesquite/minimal/NEXUSDefaults/NEXUSDefaults.class trunk/treebase-core/lib/mesquite/minimal/OpenURL/ trunk/treebase-core/lib/mesquite/minimal/OpenURL/OpenURL.class trunk/treebase-core/lib/mesquite/minimal/ShowEmployeeTree/ trunk/treebase-core/lib/mesquite/minimal/ShowEmployeeTree/EmployeeTreeWindow.class trunk/treebase-core/lib/mesquite/minimal/ShowEmployeeTree/ShowEmployeeTree.class trunk/treebase-core/lib/mesquite/minimal/StoredTaxa/ trunk/treebase-core/lib/mesquite/minimal/StoredTaxa/StoredTaxa.class trunk/treebase-core/lib/mesquite/minimal/Utilities/ trunk/treebase-core/lib/mesquite/minimal/Utilities/Utilities.class trunk/treebase-core/lib/mesquite/minimal/WindowBabysitter/ trunk/treebase-core/lib/mesquite/minimal/WindowBabysitter/WindowBabysitter.class trunk/treebase-core/lib/mesquite/minimal/explanation.txt trunk/treebase-core/lib/mesquite/molec/ trunk/treebase-core/lib/mesquite/molec/AAHydrophobicity/ trunk/treebase-core/lib/mesquite/molec/AAHydrophobicity/AAHydrophobicity.class trunk/treebase-core/lib/mesquite/molec/AASize/ trunk/treebase-core/lib/mesquite/molec/AASize/AASize.class trunk/treebase-core/lib/mesquite/molec/AminoAcidProperties/ trunk/treebase-core/lib/mesquite/molec/AminoAcidProperties/AminoAcidProperties.class trunk/treebase-core/lib/mesquite/molec/AssignGeneticCode/ trunk/treebase-core/lib/mesquite/molec/AssignGeneticCode/AssignGeneticCode.class trunk/treebase-core/lib/mesquite/molec/BLASTSearch/ trunk/treebase-core/lib/mesquite/molec/BLASTSearch/BLASTSearch.class trunk/treebase-core/lib/mesquite/molec/CharListGenCodeModels/ trunk/treebase-core/lib/mesquite/molec/CharListGenCodeModels/CharListGenCodeModels.class trunk/treebase-core/lib/mesquite/molec/CharacterGCBias/ trunk/treebase-core/lib/mesquite/molec/CharacterGCBias/CharacterGCBias.class trunk/treebase-core/lib/mesquite/molec/CodesetList/ trunk/treebase-core/lib/mesquite/molec/CodesetList/CodesetList.class trunk/treebase-core/lib/mesquite/molec/CollapseEdges/ trunk/treebase-core/lib/mesquite/molec/CollapseEdges/CollapseEdges.class trunk/treebase-core/lib/mesquite/molec/ColorByAA/ trunk/treebase-core/lib/mesquite/molec/ColorByAA/ColorByAA.class trunk/treebase-core/lib/mesquite/molec/ColorByNumber/ trunk/treebase-core/lib/mesquite/molec/ColorByNumber/CbNCompatibilityTest.class trunk/treebase-core/lib/mesquite/molec/ColorByNumber/ColorByNumber.class trunk/treebase-core/lib/mesquite/molec/CompareBasesWithTaxon/ trunk/treebase-core/lib/mesquite/molec/CompareBasesWithTaxon/CompareBasesWithTaxon.class trunk/treebase-core/lib/mesquite/molec/CurrentGenCodeModels/ trunk/treebase-core/lib/mesquite/molec/CurrentGenCodeModels/CurrentGenCodeModels.class trunk/treebase-core/lib/mesquite/molec/FetchGenBank/ trunk/treebase-core/lib/mesquite/molec/FetchGenBank/FetchGenBank.class trunk/treebase-core/lib/mesquite/molec/FillCharSelection/ trunk/treebase-core/lib/mesquite/molec/FillCharSelection/FillCharSelection.class trunk/treebase-core/lib/mesquite/molec/FindSequence/ trunk/treebase-core/lib/mesquite/molec/FindSequence/FindSequence.class trunk/treebase-core/lib/mesquite/molec/GCAsNumber/ trunk/treebase-core/lib/mesquite/molec/GCAsNumber/GCAsNumber.class trunk/treebase-core/lib/mesquite/molec/GapsToMissing/ trunk/treebase-core/lib/mesquite/molec/GapsToMissing/GapsToMissing.class trunk/treebase-core/lib/mesquite/molec/InitializeGenCode/ trunk/treebase-core/lib/mesquite/molec/InitializeGenCode/InitializeGenCode.class trunk/treebase-core/lib/mesquite/molec/LowercaseEnds/ trunk/treebase-core/lib/mesquite/molec/LowercaseEnds/LowercaseEnds.class trunk/treebase-core/lib/mesquite/molec/MaintainClipMatch/ trunk/treebase-core/lib/mesquite/molec/MaintainClipMatch/MaintainClipMatch.class trunk/treebase-core/lib/mesquite/molec/ManageCodeSets/ trunk/treebase-core/lib/mesquite/molec/ManageCodeSets/ManageCodeSets.class trunk/treebase-core/lib/mesquite/molec/ManageCodeSets/TypesetNexusCommandTest.class trunk/treebase-core/lib/mesquite/molec/MatchingSequence/ trunk/treebase-core/lib/mesquite/molec/MatchingSequence/MatchingSequence.class trunk/treebase-core/lib/mesquite/molec/MeanValueLinked/ trunk/treebase-core/lib/mesquite/molec/MeanValueLinked/MeanValueLinked.class trunk/treebase-core/lib/mesquite/molec/MissingToGaps/ trunk/treebase-core/lib/mesquite/molec/MissingToGaps/MissingToGaps.class trunk/treebase-core/lib/mesquite/molec/NucleotideComplement/ trunk/treebase-core/lib/mesquite/molec/NucleotideComplement/NucleotideComplement.class trunk/treebase-core/lib/mesquite/molec/NumLowerCase/ trunk/treebase-core/lib/mesquite/molec/NumLowerCase/NumLowerCase.class trunk/treebase-core/lib/mesquite/molec/NumberPolyInTaxon/ trunk/treebase-core/lib/mesquite/molec/NumberPolyInTaxon/NumberPolyInTaxon.class trunk/treebase-core/lib/mesquite/m... [truncated message content] |