Re: [Treebase-devel] Mesquite troubles

[youjun g. <you...@ya...>]

Rutger,

I Just noticed the mesquite jar, which was commented by you in the pom.xml
of treebase-core, is actually needed for the project. Sometimes you can get
the system compiled without it is because it already got downloaded to the
classpath,

But for a newly check out project, it will not compile without it.

Youjun

On Tue, Dec 15, 2009 at 11:34 AM, Rutger Vos <rut...@gm...> wrote:

> Hi all,
>
> I'm still having trouble getting mesquite to play nice, so this email
> is a cry for help!
>
> I'm hoping that Vladimir and/or Youjun can give this some thought as
> well, because maybe I'm just overlooking something obvious. What
> continues to happen is that mesquite can't figure out where it is
> located when I run it inside tomcat. It then tries to ask the user
> where the mesquite manual is located (so that it can compute the
> correct path relative to the manual file), but because in headless
> mode we default to "OK" on all user queries everything breaks down
> from then on.
>
> Here's what I've done recently:
>
> * I added anything that seems pertinent w.r.t. mesquite <=> treebase
> interaction to the wiki page:
>
> https://sourceforge.net/apps/mediawiki/treebase/index.php?title=HeadlessMesquite
>
> * I committed the treebase class files to /treebase-core/lib
>
> * I removed all reference to mesquite from the pom.xml files
> (apologies for adding them in the first place, I was hoping we could
> integrate it in the maven system)
>
> * I emailed Jin Ruan, Peter Midford, Mark-Jason Dominus and Wayne Maddison.
>
> Is Peter at nescent right now? Could someone knock on his door and
> plead for his help? He knows a lot about mesquite!
>
> Thanks,
>
> Rutger
>
> --
> Dr. Rutger A. Vos
> School of Biological Sciences
> Philip Lyle Building, Level 4
> University of Reading
> Reading
> RG6 6BX
> United Kingdom
> Tel: +44 (0) 118 378 7535
> http://www.nexml.org
> http://rutgervos.blogspot.com
>
>
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