[Treebase-guts] SF.net SVN: treebase:[381] trunk/treebase-core/lib/mesquite/align

[<rv...@us...>]

Revision: 381
          http://treebase.svn.sourceforge.net/treebase/?rev=381&view=rev
Author:   rvos
Date:     2009-12-15 18:37:52 +0000 (Tue, 15 Dec 2009)

Log Message:
-----------
Adding mesquite classes

Added Paths:
-----------
    trunk/treebase-core/lib/mesquite/align/lib/
    trunk/treebase-core/lib/mesquite/align/lib/AlignMatch.class
    trunk/treebase-core/lib/mesquite/align/lib/AlignScoreForTaxonGen.class
    trunk/treebase-core/lib/mesquite/align/lib/AlignTool.class
    trunk/treebase-core/lib/mesquite/align/lib/AlignUtil.class
    trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelper.class
    trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelperLinearSpace.class
    trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelperQuadraticSpace.class
    trunk/treebase-core/lib/mesquite/align/lib/BlockMover.class
    trunk/treebase-core/lib/mesquite/align/lib/CellBlock.class
    trunk/treebase-core/lib/mesquite/align/lib/ExternalSequenceAligner.class
    trunk/treebase-core/lib/mesquite/align/lib/MultipleSequenceAligner.class
    trunk/treebase-core/lib/mesquite/align/lib/PairwiseAligner.class
    trunk/treebase-core/lib/mesquite/align/lib/TwoSequenceAligner.class
    trunk/treebase-core/lib/mesquite/align/lib/TwoSequenceAlignerGaps.class

Added: trunk/treebase-core/lib/mesquite/align/lib/AlignMatch.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/AlignMatch.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/AlignScoreForTaxonGen.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/AlignScoreForTaxonGen.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/AlignTool.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/AlignTool.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/AlignUtil.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/AlignUtil.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelper.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelper.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelperLinearSpace.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelperLinearSpace.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelperQuadraticSpace.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/AlignmentHelperQuadraticSpace.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/BlockMover.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/BlockMover.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/CellBlock.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/CellBlock.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/ExternalSequenceAligner.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/ExternalSequenceAligner.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/MultipleSequenceAligner.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/MultipleSequenceAligner.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/PairwiseAligner.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/PairwiseAligner.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/TwoSequenceAligner.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/TwoSequenceAligner.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: trunk/treebase-core/lib/mesquite/align/lib/TwoSequenceAlignerGaps.class
===================================================================
(Binary files differ)


Property changes on: trunk/treebase-core/lib/mesquite/align/lib/TwoSequenceAlignerGaps.class
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream


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