Re: [Treebase-devel] Getting started with TreeeBase development

[Rutger V. <rut...@gm...>]

Yup, that is exactly what it does.

On Tue, Dec 8, 2009 at 3:36 PM, youjun guo <you...@ya...> wrote:
> That's great.
>
> Based my understand, correct me if I am wrong, the "publish" script will:
>
> 1. download the new version of the source code form sourceforge;
> 2. build the war
> 3. re-deploy
>
> Youjun
>
> On Tue, Dec 8, 2009 at 10:08 AM, Rutger Vos <rut...@gm...> wrote:
>>
>> > Rutger, I am going through the source code, and will have time working
>> > on
>> > the debugging of the TreeBASE code. The question is, do we need to build
>> > and
>> > re-deploy the war file to the production server every time we fix a bug?
>>
>> In principle that would be handy, so that others can see the
>> improvement right away when a ticket is closed. It's not that hard to
>> do though: when you ssh into treebasedb-dev.nescent.org all you have
>> to do is issue 'publish' on the command line (it's in the $PATH) and
>> it'll update the source, build the war, copy it into the tomcat
>> servlet folder and restart tomcat.
>>
>> > On Tue, Dec 8, 2009 at 4:44 AM, Rutger Vos <rut...@gm...> wrote:
>> >>
>> >> Dear Vladimir,
>> >>
>> >> thanks for taking the initiative on this, welcome aboard!
>> >>
>> >> > The high-priority items marked with my name in the release plan
>> >> > (google doc) are:
>> >> > - TreeBase: TB1 --> TB2 import
>> >> > - TreeBase: Password hashing [TB 2797430]
>> >> > - TreeBase: Reviewer/Referee Access [TB 2826165]
>> >> > My feeling is that the 1st of them (TB1 --> TB2 import) is the most
>> >> > pressing, but that  the other two could be easier to understand.
>> >> > Which one would make the most sense to start with?
>> >>
>> >> Either Password hashing or referee access. I know that TB1->TB2 import
>> >> might seem the most pressing on the surface, but that item is actually
>> >> only about 2009 submissions, we have all the data from preceding
>> >> years. Besides, doing the last import requires some amount of
>> >> pre-processing on the part of Bill Piel.
>> >>
>> >> > In any case, I'd need 1-on-1 help (Skype?) with someone who can show
>> >> > me the ropes as well as explain in some detail what needs to be done.
>> >> > Rutger?
>> >>
>> >> I'd prefer we make initial contact through gmail chat. I always have a
>> >> tab with gmail open in my browser, so you can always ping me that way
>> >> (user: rutgeraldo). If you want to hear my voice we can just take it
>> >> from there, either through google voice chat or skype or ichat.
>> >>
>> >> > So far, I have scanned through all the wiki pages accessible from the
>> >> > root.  My next step will be setting up a development environment as
>> >> > outlined on
>> >> >
>> >> > https://sourceforge.net/apps/mediawiki/treebase/index.php?title=DeveloperEnvironment
>> >> >   Can someone clarify whether I will need to set up a local DB and a
>> >> > local web server for development purposes or whether I should use
>> >> > those at treebase-dev.nescent.org ?
>> >>
>> >> You don't need to set up a local DB (I can give you the JDBC
>> >> connection credentials for the nescent instance off-list), but it's
>> >> probably handy if you do set up a local tomcat, either integrated in
>> >> eclipse or to launch using the publish script that we also use for
>> >> building and deploying on treebasedb-dev.nescent.org
>> >>
>> >> > Do developers have application accounts, with varying privileges, for
>> >> > playing and testing?  I did auto-register for an account (vgapeyev),
>> >> > which got a "User" role.
>> >>
>> >> Yes, it's handy to have one of those. You will probably want to be
>> >> able to upgrade and downgrade that account once in a while to see the
>> >> User view versus the Reviewer or Admin view.
>> >>
>> >> > Is there a pre-laid DB diagram somewhere, or any other documentation
>> >> > on the DB and application design and architecture?
>> >>
>> >> Not at this point. There are old ER diagrams of the schema but they
>> >> will probably be more confusing than helpful at this point, being out
>> >> of date. What you can do is install Aqua Data Studio
>> >> (http://www.aquafold.com/) and use that to create new diagrams,
>> >> explore the tables in other ways and run queries from your desktop.
>> >>
>> >> Rutger
>> >>
>> >> --
>> >> Dr. Rutger A. Vos
>> >> School of Biological Sciences
>> >> Philip Lyle Building, Level 4
>> >> University of Reading
>> >> Reading
>> >> RG6 6BX
>> >> United Kingdom
>> >> Tel: +44 (0) 118 378 7535
>> >> http://www.nexml.org
>> >> http://rutgervos.blogspot.com
>> >>
>> >>
>> >>
>> >> ------------------------------------------------------------------------------
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>> >
>> >
>>
>>
>>
>> --
>> Dr. Rutger A. Vos
>> School of Biological Sciences
>> Philip Lyle Building, Level 4
>> University of Reading
>> Reading
>> RG6 6BX
>> United Kingdom
>> Tel: +44 (0) 118 378 7535
>> http://www.nexml.org
>> http://rutgervos.blogspot.com
>
>



-- 
Dr. Rutger A. Vos
School of Biological Sciences
Philip Lyle Building, Level 4
University of Reading
Reading
RG6 6BX
United Kingdom
Tel: +44 (0) 118 378 7535
http://www.nexml.org
http://rutgervos.blogspot.com