Re: [Treebase-devel] Getting started with TreeeBase development

[youjun g. <you...@ya...>]

That's great.

Based my understand, correct me if I am wrong, the "publish" script will:

1. download the new version of the source code form sourceforge;
2. build the war
3. re-deploy

Youjun

On Tue, Dec 8, 2009 at 10:08 AM, Rutger Vos <rut...@gm...> wrote:

> > Rutger, I am going through the source code, and will have time working on
> > the debugging of the TreeBASE code. The question is, do we need to build
> and
> > re-deploy the war file to the production server every time we fix a bug?
>
> In principle that would be handy, so that others can see the
> improvement right away when a ticket is closed. It's not that hard to
> do though: when you ssh into treebasedb-dev.nescent.org all you have
> to do is issue 'publish' on the command line (it's in the $PATH) and
> it'll update the source, build the war, copy it into the tomcat
> servlet folder and restart tomcat.
>
> > On Tue, Dec 8, 2009 at 4:44 AM, Rutger Vos <rut...@gm...> wrote:
> >>
> >> Dear Vladimir,
> >>
> >> thanks for taking the initiative on this, welcome aboard!
> >>
> >> > The high-priority items marked with my name in the release plan
> >> > (google doc) are:
> >> > - TreeBase: TB1 --> TB2 import
> >> > - TreeBase: Password hashing [TB 2797430]
> >> > - TreeBase: Reviewer/Referee Access [TB 2826165]
> >> > My feeling is that the 1st of them (TB1 --> TB2 import) is the most
> >> > pressing, but that  the other two could be easier to understand.
> >> > Which one would make the most sense to start with?
> >>
> >> Either Password hashing or referee access. I know that TB1->TB2 import
> >> might seem the most pressing on the surface, but that item is actually
> >> only about 2009 submissions, we have all the data from preceding
> >> years. Besides, doing the last import requires some amount of
> >> pre-processing on the part of Bill Piel.
> >>
> >> > In any case, I'd need 1-on-1 help (Skype?) with someone who can show
> >> > me the ropes as well as explain in some detail what needs to be done.
> >> > Rutger?
> >>
> >> I'd prefer we make initial contact through gmail chat. I always have a
> >> tab with gmail open in my browser, so you can always ping me that way
> >> (user: rutgeraldo). If you want to hear my voice we can just take it
> >> from there, either through google voice chat or skype or ichat.
> >>
> >> > So far, I have scanned through all the wiki pages accessible from the
> >> > root.  My next step will be setting up a development environment as
> >> > outlined on
> >> >
> https://sourceforge.net/apps/mediawiki/treebase/index.php?title=DeveloperEnvironment
> >> >   Can someone clarify whether I will need to set up a local DB and a
> >> > local web server for development purposes or whether I should use
> >> > those at treebase-dev.nescent.org ?
> >>
> >> You don't need to set up a local DB (I can give you the JDBC
> >> connection credentials for the nescent instance off-list), but it's
> >> probably handy if you do set up a local tomcat, either integrated in
> >> eclipse or to launch using the publish script that we also use for
> >> building and deploying on treebasedb-dev.nescent.org
> >>
> >> > Do developers have application accounts, with varying privileges, for
> >> > playing and testing?  I did auto-register for an account (vgapeyev),
> >> > which got a "User" role.
> >>
> >> Yes, it's handy to have one of those. You will probably want to be
> >> able to upgrade and downgrade that account once in a while to see the
> >> User view versus the Reviewer or Admin view.
> >>
> >> > Is there a pre-laid DB diagram somewhere, or any other documentation
> >> > on the DB and application design and architecture?
> >>
> >> Not at this point. There are old ER diagrams of the schema but they
> >> will probably be more confusing than helpful at this point, being out
> >> of date. What you can do is install Aqua Data Studio
> >> (http://www.aquafold.com/) and use that to create new diagrams,
> >> explore the tables in other ways and run queries from your desktop.
> >>
> >> Rutger
> >>
> >> --
> >> Dr. Rutger A. Vos
> >> School of Biological Sciences
> >> Philip Lyle Building, Level 4
> >> University of Reading
> >> Reading
> >> RG6 6BX
> >> United Kingdom
> >> Tel: +44 (0) 118 378 7535
> >> http://www.nexml.org
> >> http://rutgervos.blogspot.com
> >>
> >>
> >>
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> >
>
>
>
> --
> Dr. Rutger A. Vos
> School of Biological Sciences
> Philip Lyle Building, Level 4
> University of Reading
> Reading
> RG6 6BX
> United Kingdom
> Tel: +44 (0) 118 378 7535
> http://www.nexml.org
> http://rutgervos.blogspot.com
>