[Treebase-guts] [ treebase-Bugs-2692361 ] Botched tree loading

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Bugs item #2692361, was opened at 2009-03-18 18:27
Message generated for change (Settings changed) made by rvos
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Category: data
Group: None
>Status: Closed
Priority: 9
Private: No
Submitted By: Mark Dominus (mjdominus)
Assigned to: Rutger Vos (rvos)
Summary: Botched tree loading

Initial Comment:
Study #235 has 7 trees; each has only one phylotreenode.  This is wrong.  The trees are defined in the dump file 
treebase-data/tree/A160c2x6x96c17c39c42.tre, attached with this bug report.  They are supposed to have around 13 leaf nodes each.

The (erroneous) versions in the database now are as follows:

| | | |-PhyloTree #4347 (T373c2x6x96c17c40c07)
| | | |-PhyloTree #4348 (T374c2x6x96c17c40c12)
| | | |-PhyloTree #4349 (T375c2x6x96c17c40c15)
| | | |-PhyloTree #4350 (T376c2x6x96c17c40c18)
| | | |-PhyloTree #4351 (T377c2x6x96c17c40c22)
| | | |-PhyloTree #4352 (T378c2x6x96c17c40c25)
| | | |-PhyloTree #4353 (T379c2x6x96c17c40c28)

There may be many other such erroneous trees in the database; a query finds 86 trees with NTAX < 2.

Figure out what went wrong.  Reload the broken trees and reattach them to the studies.


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>Comment By: Rutger Vos (rvos)
Date: 2009-11-20 16:46

Message:
I now consider this as being subsumed by issue #2897306 so I am closing
this one and close the other one once the trees are re-loaded.

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You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2692361&group_id=248804