[Treebase-guts] [ treebase-Bugs-2717395 ] Finish analyzing Consistency checker reports

[SourceForge.net <no...@so...>]

Bugs item #2717395, was opened at 2009-03-27 20:10
Message generated for change (Settings changed) made by rvos
You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2717395&group_id=248804

Please note that this message will contain a full copy of the comment thread,
including the initial issue submission, for this request,
not just the latest update.
Category: data
Group: None
Status: Open
>Priority: 9
Private: No
Submitted By: Mark Dominus (mjdominus)
Assigned to: Nobody/Anonymous (nobody)
Summary: Finish analyzing Consistency checker reports

Initial Comment:
The consistency checker last ran starting 20090327 and produced about 1000 reports of inconsistencies.  These must all be resolved one way or another.



----------------------------------------------------------------------

Comment By: Mark Dominus (mjdominus)
Date: 2009-03-30 18:15

Message:
Complete report from run of 20090325-2009-0328 is now attached.  The
numbers in the previous comment are based on an incomplete version of this
report.


----------------------------------------------------------------------

Comment By: Mark Dominus (mjdominus)
Date: 2009-03-27 20:56

Message:
Most of the reports are spurious: 821/945 concern analyses which contain
more than one taxonlabelset.  But this is not erroneous.

Around 124 of the reports are legitimate.

Of these, most are of the form:
** PhyloTreeNode 287115 is a leaf but has no TaxonLabel
These are probably manifestations of bug #2692361.

25 further messages concern analyses with no trees, no matrices, or no
taxonlabelsets.  I have asked Bill about these.



----------------------------------------------------------------------

You can respond by visiting: 
https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2717395&group_id=248804