Menu
▾
▴
[Treebase-guts] [ treebase-Bugs-2861595 ] matrices cannot be viewed
|
From: SourceForge.net <no...@so...> - 2009-11-18 13:41:36
|
Bugs item #2861595, was opened at 2009-09-18 18:01 Message generated for change (Comment added) made by rvos You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2861595&group_id=248804 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: ui Group: None >Status: Closed Priority: 5 Private: No Submitted By: Ryan Scherle (rscherle) >Assigned to: Rutger Vos (rvos) Summary: matrices cannot be viewed Initial Comment: When I click on the ID for a matrix, or any of the download icons, I receive an error from Hibernate. ---------------------------------------------------------------------- >Comment By: Rutger Vos (rvos) Date: 2009-11-18 13:41 Message: This bug was caused by an incorrect mapping between the database type and its java representation. When we were using DB2, nexus strings were stored as CLOBs and needed to be converted to String objects in the client code. Now that we're using PostgreSQL nexus strings are stored as TEXT and are automatically converted to Strings by Hibernate. However, the old CLOB handling code was still littered all over the code base. This has now been corrected. Matrices (and trees) now download correctly. ---------------------------------------------------------------------- Comment By: Rutger Vos (rvos) Date: 2009-11-18 13:41 Message: Your bug has been resolved. Thanks for the report. ---------------------------------------------------------------------- Comment By: William Piel (sfrgpiel) Date: 2009-09-19 14:00 Message: This seems to be related to PhyloWS. If you try to download a matrix from the search tabs, it works. e.g: http://8ball.sdsc.edu:6666/treebase-web/search/downloadAMatrix.html?id=1282&matrixid=2855 But if you try to download the very same matrix after tunneling through the study, the method used is not with PhyloWS, and the result throws and uncaught exception: http://8ball.sdsc.edu:6666/treebase-web/phylows/matrix/TB2:M2855?format=nexus ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2861595&group_id=248804 |
