[Treebase-guts] [ treebase-Bugs-2896043 ] nexus from analysis creates redundant taxon blocks

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Bugs item #2896043, was opened at 2009-11-11 11:45
Message generated for change (Tracker Item Submitted) made by sfrgpiel
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Category: data
Group: None
Status: Open
Priority: 5
Private: No
Submitted By: William Piel (sfrgpiel)
Assigned to: Mark Dominus (mjdominus)
Summary: nexus from analysis creates redundant taxon blocks

Initial Comment:
Reconstructing the nexus of an analysis step, such as this:

http://treebasedb-dev.nescent.org:6666/treebase-web/search/downloadAnAnalysisStep.html?analysisid=1953

Results in one taxon block per character block and one taxon block per tree block. These are redundant and cause an error in Mesquite. Since analysis steps do not allow trees to have taxa not found in related matrices, each analysis step nexus should have only one taxon block, with all tree and character blocks linking to it. 

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You can respond by visiting: 
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