Re: [Treebase-devel] 8ball TreeBASE Down

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This sounds like the database is down. Or it is up but has been down  
temporarily and so the connection handles in the pool have gotten  
stale. You can take care of the latter by restarting the application  
server (Tomcat, I presume).

	-hilmar

On Sep 11, 2009, at 9:21 AM, William Piel wrote:

>
> TreeBASE (http://8ball.sdsc.edu:6666/) seems to be down. Is this a  
> broken application service for SDSC staff to fix?
>
> Below is the result of a simple author search.
>
> bp
>
>
> Could not open Hibernate Session for transaction; nested exception  
> is org.hibernate.exception.GenericJDBCException: Cannot open  
> connection
>
> org.springframework.transaction.CannotCreateTransactionException:  
> Could not open Hibernate Session for transaction; nested exception  
> is org.hibernate.exception.GenericJDBCException: Cannot open  
> connection Caused by: org.hibernate.exception.GenericJDBCException:  
> Cannot open connection at  
> org 
> .hibernate 
> .exception 
> .SQLStateConverter 
> .handledNonSpecificException(SQLStateConverter.java:103) at  
> org 
> .hibernate 
> .exception.SQLStateConverter.convert(SQLStateConverter.java:91) at  
> org 
> .hibernate 
> .exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)  
> at  
> org 
> .hibernate 
> .exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29)  
> at  
> org 
> .hibernate 
> .jdbc.ConnectionManager.openConnection(ConnectionManager.java:426)  
> at  
> org 
> .hibernate 
> .jdbc.ConnectionManager.getConnection(ConnectionManager.java:144) at  
> org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119) at  
> org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java: 
> 57) at  
> org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java: 
> 1326) at  
> org 
> .springframework 
> .orm 
> .hibernate3 
> .HibernateTransactionManager 
> .doBegin(HibernateTransactionManager.java:510) at  
> org 
> .springframework 
> .transaction 
> .support 
> .AbstractPlatformTransactionManager 
> .getTransaction(AbstractPlatformTransactionManager.java:350) at  
> org 
> .springframework 
> .transaction 
> .interceptor 
> .TransactionAspectSupport 
> .createTransactionIfNecessary(TransactionAspectSupport.java:262) at  
> org 
> .springframework 
> .transaction 
> .interceptor 
> .TransactionInterceptor.invoke(TransactionInterceptor.java:101) at  
> org 
> .springframework 
> .aop 
> .framework 
> .ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java: 
> 171) at  
> org 
> .springframework 
> .aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java: 
> 204) at $Proxy83.getStudyService(Unknown Source) at  
> org 
> .cipres 
> .treebase 
> .web 
> .controllers 
> .StudySearchController.doSearch(StudySearchController.java:276) at  
> org 
> .cipres 
> .treebase 
> .web 
> .controllers 
> .StudySearchController.onSubmit(StudySearchController.java:163) at  
> org.springframework.web.servlet.mvc.SimpleFormController.processFormSubmission 
> (SimpleFormController.java:267) at org.springframework.web.servlet.mvc.CancellableFormController.processFormSubmission 
> (CancellableFormController.java:140) at org.springframework.web.servlet.mvc.AbstractFormController.handleRequestInternal 
> (AbstractFormController.java:265) at org.springframework.web.servlet.mvc.AbstractController.handleRequest 
> (AbstractController.java:153) at org.springframework.web.servlet.mvc.SimpleControllerHandlerAdapter.handle 
> (SimpleControllerHandlerAdapter.java:48) at org.springframework.web.servlet.DispatcherServlet.doDispatch 
> (DispatcherServlet.java:858) at org.springframework.web.servlet.DispatcherServlet.doService 
> (DispatcherServlet.java:792) at org.springframework.web.servlet.FrameworkServlet.processRequest 
> (FrameworkServlet.java:476) at org.springframework.web.servlet.FrameworkServlet.doPost 
> (FrameworkServlet.java:441) at  
> javax.servlet.http.HttpServlet.service(HttpServlet.java:710) at  
> javax.servlet.http.HttpServlet.service(HttpServlet.java:803) at  
> org 
> .apache 
> .catalina 
> .core 
> .ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
> 269) at  
> org 
> .apache 
> .catalina 
> .core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java: 
> 188) at  
> org 
> .displaytag 
> .filter.ResponseOverrideFilter.doFilter(ResponseOverrideFilter.java: 
> 125) at  
> org 
> .apache 
> .catalina 
> .core 
> .ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
> 215) at  
> org 
> .apache 
> .catalina 
> .core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java: 
> 188) at  
> org 
> .springframework 
> .orm 
> .hibernate3 
> .support 
> .OpenSessionInViewFilter 
> .doFilterInternal(OpenSessionInViewFilter.java:198) at  
> org 
> .springframework 
> .web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java: 
> 75) at  
> org 
> .apache 
> .catalina 
> .core 
> .ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
> 215) at  
> org 
> .apache 
> .catalina 
> .core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java: 
> 188) at  
> com 
> .opensymphony 
> .module.sitemesh.filter.PageFilter.parsePage(PageFilter.java:119) at  
> com 
> .opensymphony 
> .module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:55) at  
> org 
> .apache 
> .catalina 
> .core 
> .ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
> 215) at  
> org 
> .apache 
> .catalina 
> .core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java: 
> 188) at org.acegisecurity.util.FilterChainProxy 
> $VirtualFilterChain.doFilter(FilterChainProxy.java:264) at  
> org 
> .acegisecurity 
> .intercept 
> .web.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java: 
> 107) at org.acegisecurity.intercept.web.FilterSecurityInterceptor.doFilter 
> (FilterSecurityInterceptor.java:72) at  
> org.acegisecurity.util.FilterChainProxy 
> $VirtualFilterChain.doFilter(FilterChainProxy.java:274) at  
> org 
> .acegisecurity 
> .ui 
> .ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java: 
> 110) at org.acegisecurity.util.FilterChainProxy 
> $VirtualFilterChain.doFilter(FilterChainProxy.java:274) at  
> org 
> .acegisecurity 
> .wrapper 
> .SecurityContextHolderAwareRequestFilter 
> .doFilter(SecurityContextHolderAwareRequestFilter.java:81) at  
> org.acegisecurity.util.FilterChainProxy 
> $VirtualFilterChain.doFilter(FilterChainProxy.java:274) at  
> org 
> .acegisecurity 
> .ui.AbstractProcessingFilter.doFilter(AbstractProcessingFilter.java: 
> 217) at org.acegisecurity.util.FilterChainProxy 
> $VirtualFilterChain.doFilter(FilterChainProxy.java:274) at  
> org 
> .acegisecurity 
> .context 
> .HttpSessionContextIntegrationFilter 
> .doFilter(HttpSessionContextIntegrationFilter.java:191) at  
> org.acegisecurity.util.FilterChainProxy 
> $VirtualFilterChain.doFilter(FilterChainProxy.java:274) at  
> org 
> .acegisecurity.util.FilterChainProxy.doFilter(FilterChainProxy.java: 
> 148) at  
> org 
> .acegisecurity 
> .util.FilterToBeanProxy.doFilter(FilterToBeanProxy.java:90) at  
> org 
> .apache 
> .catalina 
> .core 
> .ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
> 215) at  
> org 
> .apache 
> .catalina 
> .core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java: 
> 188) at  
> org 
> .apache 
> .catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java: 
> 213) at  
> org 
> .apache 
> .catalina.core.StandardContextValve.invoke(StandardContextValve.java: 
> 174) at  
> org 
> .apache 
> .catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)  
> at  
> org 
> .apache 
> .catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)  
> at  
> org 
> .apache 
> .catalina.core.StandardEngineValve.invoke(StandardEngineValve.java: 
> 108) at  
> org 
> .apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java: 
> 174) at  
> org 
> .apache.coyote.http11.Http11Processor.process(Http11Processor.java: 
> 874) at org.apache.coyote.http11.Http11BaseProtocol 
> $Http11ConnectionHandler.processConnection(Http11BaseProtocol.java: 
> 665) at  
> org 
> .apache 
> .tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java: 
> 528) at  
> org 
> .apache 
> .tomcat 
> .util 
> .net 
> .LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java: 
> 81) at org.apache.tomcat.util.threads.ThreadPool 
> $ControlRunnable.run(ThreadPool.java:689) at  
> java.lang.Thread.run(Thread.java:595) Caused by:  
> java.sql.SQLException: Connections could not be acquired from the  
> underlying database! at  
> com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:106) at  
> com 
> .mchange 
> .v2 
> .c3p0 
> .impl 
> .C3P0PooledConnectionPool 
> .checkoutPooledConnection(C3P0PooledConnectionPool.java:529) at  
> com 
> .mchange 
> .v2 
> .c3p0 
> .impl 
> .AbstractPoolBackedDataSource 
> .getConnection(AbstractPoolBackedDataSource.java:128) at  
> org 
> .springframework 
> .orm 
> .hibernate3 
> .LocalDataSourceConnectionProvider 
> .getConnection(LocalDataSourceConnectionProvider.java:81) at  
> org 
> .hibernate 
> .jdbc.ConnectionManager.openConnection(ConnectionManager.java: 
> 423) ... 65 more Caused by:  
> com.mchange.v2.resourcepool.CannotAcquireResourceException: A  
> ResourcePool could not acquire a resource from its primary factory  
> or source. at  
> com 
> .mchange 
> .v2 
> .resourcepool 
> .BasicResourcePool.awaitAvailable(BasicResourcePool.java:1319) at  
> com 
> .mchange 
> .v2 
> .resourcepool 
> .BasicResourcePool.prelimCheckoutResource(BasicResourcePool.java: 
> 557) at  
> com 
> .mchange 
> .v2 
> .resourcepool 
> .BasicResourcePool.checkoutResource(BasicResourcePool.java:477) at  
> com 
> .mchange 
> .v2 
> .c3p0 
> .impl 
> .C3P0PooledConnectionPool 
> .checkoutPooledConnection(C3P0PooledConnectionPool.java:525) ... 68  
> more « Back
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-- 
===========================================================
: Hilmar Lapp  -:-  Durham, NC  -:- hlapp at duke dot edu :
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