[Treebase-guts] SF.net SVN: treebase:[181] trunk/treebase-core/src/main/java/org/cipres/ treebase/util/TreeQuery.java

[<mjd...@us...>]

Revision: 181
          http://treebase.svn.sourceforge.net/treebase/?rev=181&view=rev
Author:   mjdominus
Date:     2009-07-15 19:09:55 +0000 (Wed, 15 Jul 2009)

Log Message:
-----------
new utility to exercise findByTopology3() function

Added Paths:
-----------
    trunk/treebase-core/src/main/java/org/cipres/treebase/util/TreeQuery.java

Added: trunk/treebase-core/src/main/java/org/cipres/treebase/util/TreeQuery.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/util/TreeQuery.java	                        (rev 0)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/util/TreeQuery.java	2009-07-15 19:09:55 UTC (rev 181)
@@ -0,0 +1,40 @@
+package org.cipres.treebase.util;
+
+import java.util.Set;
+
+import org.cipres.treebase.ContextManager;
+import org.cipres.treebase.domain.taxon.TaxonLabelService;
+import org.cipres.treebase.domain.taxon.TaxonVariant;
+import org.cipres.treebase.domain.tree.PhyloTree;
+import org.cipres.treebase.domain.tree.PhyloTreeService;
+
+public class TreeQuery extends AbstractStandalone {
+	public static void main(String[] args) {
+		setupContext();
+		PhyloTreeService treeServ = ContextManager.getPhyloTreeService();
+		TaxonLabelService tlServ = ContextManager.getTaxonLabelService();
+		
+		Set<TaxonVariant>[] tvSet = new Set[3];
+		for (int i=0; i<3; i++) {
+			tvSet[i] = tlServ.findTaxonVariantByName(args[i]);
+			warn(args[i] + " yields " + tvSet[i].size() + " matches");
+		}
+		
+		TaxonVariant[] tv = new TaxonVariant[3];
+		for (int i=0; i<3; i++) {
+			tv[i] = tvSet[i].iterator().next();
+			tvShow(tv[i]);
+		}		
+		
+		Set<PhyloTree> trees = treeServ.findByTopology3(tv[0], tv[1], tv[2]);
+		warn("Found " + trees.size() + " trees.");
+		
+		for (PhyloTree t : trees) {
+			System.out.println(t.getId());
+		}
+	}
+	
+	public static void tvShow(TaxonVariant tv) {
+		warn("Tv" + tv.getId() + ": " + tv.getName());
+	}
+}


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