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Re: [Treebase-devel] [eX-purgate bulk]: Re: PhyloWS, CQL, NeXML on TreeBASE2
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From: William P. <wil...@ya...> - 2009-07-03 16:14:57
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cool stuff. I notice that this departs a bit from the phylows that is proposed here. For example, the proposed phylows puts "/find/" before "/ tree/", whereas you have it the other way. And the other major difference is that the proposed phylows suggest that to search on trees you do something like: /phylows/find/tree/?name=Primates whereas you are implementing: /phylows/taxon/find/?name=Primates&recordSchema=tree Your method is probably better and clearer -- in that it makes more sense that we're doing a find on a taxon with the result being a tree (only the taxon label is inherently part of the tree object), but perhaps we should get the other PhyloWS developers in agreement (i.e. Ryan Scherle), and then modify the wiki accordingly. I notice that while the following produces a hit of one record: http://8ball.sdsc.edu:6666/treebase-web/phylows/taxon/find?query=tb.title.taxon==Homo ...yet I'm unable to get any results via rss: http://8ball.sdsc.edu:6666/treebase-web/phylows/taxon/find?query=tb.title.taxon==Homo&format=rss1 Is my syntax incorrect? Also, I believe that this should give me a list of trees: http://8ball.sdsc.edu:6666/treebase-web/phylows/taxon/find?query=tb.title.taxon==Homo&recordSchema=tree but instead it gives me a list of taxa. Perhaps my syntax is wrong? bp On Jul 2, 2009, at 9:40 PM, Rutger Vos wrote: > erm, please substitute 8ball.sdsc.edu:6666 for localhost:8080 in the > examples below. > > On Thu, Jul 2, 2009 at 4:10 PM, Rutger Vos<rut...@gm...> > wrote: >> Hi, >> >> I've implemented nexml export on treebase2, and made the serializer >> attach predicates from this list >> (http://spreadsheets.google.com/pub?key=rL--O7pyhR8FcnnG5-ofAlw) in >> the indicated locations. The predicates with asterisks can be used as >> search predicates through the PhyloWS architecture as described here: >> http://localhost:8080/treebase-web/help/urlAPI.jsp >> >> In addition, CQL searches can be tried out on the main search tabs by >> clicking the "Advanced search..." links, e.g. see: >> http://localhost:8080/treebase-web/search/studySearch.html >> >> Rutger >> >> -- >> Dr. Rutger A. Vos >> Department of zoology >> University of British Columbia >> http://www.nexml.org >> http://rutgervos.blogspot.com >> |
