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[Treebase-guts] [ treebase-Bugs-2798604 ] no block of taxa could be created from a MrBayes .con tree
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From: SourceForge.net <no...@so...> - 2009-06-27 07:31:16
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Bugs item #2798604, was opened at 2009-05-29 21:21 Message generated for change (Comment added) made by rvos You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2798604&group_id=248804 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: data Group: None Status: Open Priority: 8 Private: No Submitted By: Blaise Li (blaiseli) Assigned to: Mark Dominus (mjdominus) Summary: no block of taxa could be created from a MrBayes .con tree Initial Comment: The upoad of the attached file fails: it says it cannot generate a block of taxa. This is either a bug or a strong limitation: the file contains a nexus tree obtained from MrBayes; it should not be so special. ---------------------------------------------------------------------- Comment By: Rutger Vos (rvos) Date: 2009-06-27 07:31 Message: The issue is because, although mesquite *can* create a taxa block on the fly while reading a tree block without a translation table, it doesn't want to. It prods the user for feedback, which makes the import hang in headless mode. Bill has emailed the Maddisons about this, and it looks like the issue could certainly be fixed in their code (even if that would make it some sort of treebase special). But - then we have to fold that change into our previous treebase special version of mesquite, which was a snapshot roughly at version 2.1, and we're now at 2.6. I did some testing and some methods have changed or have been removed, so we would need to adapt our code base to that new api. ---------------------------------------------------------------------- Comment By: William Piel (sfrgpiel) Date: 2009-06-23 14:29 Message: This looks like a difficult bug to fix because the problem stems from Mesquite. I'm puzzled why Mesquite cannot create a default taxon block from a tree block that does not use a translation table. I've tried opening trees like this in Mesquite v. 2 with no success... ---------------------------------------------------------------------- Comment By: William Piel (sfrgpiel) Date: 2009-06-23 14:29 Message: Thanks for reporting this bug. We'll look into it as soon as possible. ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2798604&group_id=248804 |
