[Treebase-guts] SF.net SVN: treebase:[59] trunk/treebase-core/src/main/java/org/cipres/ treebase/service/nexus/NexusServiceNexml.java

[<rv...@us...>]

Revision: 59
          http://treebase.svn.sourceforge.net/treebase/?rev=59&view=rev
Author:   rvos
Date:     2009-06-18 09:40:42 +0000 (Thu, 18 Jun 2009)

Log Message:
-----------
Added NexusService for NeXML

Added Paths:
-----------
    trunk/treebase-core/src/main/java/org/cipres/treebase/service/nexus/NexusServiceNexml.java

Added: trunk/treebase-core/src/main/java/org/cipres/treebase/service/nexus/NexusServiceNexml.java
===================================================================
--- trunk/treebase-core/src/main/java/org/cipres/treebase/service/nexus/NexusServiceNexml.java	                        (rev 0)
+++ trunk/treebase-core/src/main/java/org/cipres/treebase/service/nexus/NexusServiceNexml.java	2009-06-18 09:40:42 UTC (rev 59)
@@ -0,0 +1,52 @@
+package org.cipres.treebase.service.nexus;
+
+import java.io.File;
+import java.util.Collection;
+
+import org.apache.log4j.Logger;
+import org.cipres.treebase.domain.DomainHome;
+import org.cipres.treebase.domain.nexus.NexusDataSet;
+import org.cipres.treebase.domain.nexus.NexusService;
+import org.cipres.treebase.domain.nexus.nexml.NexmlConverter;
+import org.cipres.treebase.domain.study.Study;
+import org.cipres.treebase.event.ProgressionListener;
+import org.cipres.treebase.service.AbstractServiceImpl;
+
+public class NexusServiceNexml extends AbstractServiceImpl implements NexusService {
+	private static final Logger LOGGER = Logger.getLogger(NexusServiceNexml.class);
+	private DomainHome mDomainHome;
+
+	@Override
+	public Class defaultResultClass() {
+		return null;
+	}
+
+	@Override
+	protected DomainHome getDomainHome() {
+		return mDomainHome;
+	}
+	
+	public void setDomainHome(DomainHome domainHome) {
+		mDomainHome = domainHome;
+	}
+
+	public NexusDataSet parseNexus(Study study, Collection<File> nexusFiles,
+			ProgressionListener listener) {
+		// TODO Auto-generated method stub
+		return null;
+	}
+
+	public NexusDataSet parseNexus(Study study, File nexusFile) {
+		if (study == null) {
+			if (LOGGER.isInfoEnabled()) {
+				LOGGER.info("parseNexus - Study is null"); //$NON-NLS-1$
+			}
+			return null;
+		}		
+		NexusDataSet data = new NexusDataSet();
+		NexmlConverter converter = new NexmlConverter();
+		converter.parseOneFile(nexusFile, study, data);
+		return data;
+	}
+
+}


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