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[Treebase-guts] [ treebase-Bugs-2712234 ] Taxon label editor displays wrong items
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From: SourceForge.net <no...@so...> - 2009-05-08 13:45:37
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Bugs item #2712234, was opened at 2009-03-25 13:47 Message generated for change (Comment added) made by mjdominus You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2712234&group_id=248804 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: ui Group: piel >Status: Closed Priority: 8 Private: No Submitted By: Mark Dominus (mjdominus) Assigned to: Mark Dominus (mjdominus) Summary: Taxon label editor displays wrong items Initial Comment: BP reports that during taxon validation, > When I follow one of the "validate by hand" links, I see a list like this one for Actinomucor elegans: but it list three identical items to > choose from, each having identical ncbi_taxids. We should never really see a list of multiple hits each with the same ncbi_taxid, but > we can see multiple hits on the same ubio_namebankid. (See http://8ball.sdsc.edu:6666/treebase-web/user/editTaxonLabel.html?taxonlabelid=237178 ; a copy of the HTML file is attached) ---------------------------------------------------------------------- >Comment By: Mark Dominus (mjdominus) Date: 2009-05-08 09:45 Message: Piel did not reply to my request for signoff two weeks ago, so I am closing this. ---------------------------------------------------------------------- Comment By: Mark Dominus (mjdominus) Date: 2009-04-22 15:09 Message: I rebuilt the TI database; I believe it is complete and correct now. I am awaiting confirmation from Bill to close this. ---------------------------------------------------------------------- Comment By: Rutger Vos (rvos) Date: 2009-04-02 02:11 Message: Unfortunately, the taxon label editor actually displays the *right* items. Namely, there are three taxon variants with the same name, namebankID and NCBI taxon ID in the database: Actinomucor elegans, (Internal ID: 894, uBio: 2832730, NCBI: 64647) Actinomucor elegans, (Internal ID: 546683, uBio: 2832730, NCBI: 64647) Actinomucor elegans, (Internal ID: 554383, uBio: 2832730, NCBI: 64647) It seems to me that the only way in which this issue can be resolved is by re-validating the loaded taxon, taxonvariant and taxonlabel data and collapsing such duplicates. As per revision 6373, the duplicates are shown, e.g. see http://8ball.sdsc.edu:6666/treebase-web/user/editTaxonLabel.html?taxonlabelid=237178 ---------------------------------------------------------------------- Comment By: Mark Dominus (mjdominus) Date: 2009-03-25 14:18 Message: Also there is a lower-priority component to this bug; see #2712268 ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=1126676&aid=2712234&group_id=248804 |
