#3 Data missing from search results

[Anonymous]

Email address:Johan.Lennartsson@LICR.uu.se

Comments: I have created the GFF file with data from LICR-UPP
(TRANSFOG partner 15) but is unable to upload the data. Is this a
temporary problem or am I doing something wrong?

----

User:

[Antony Quinn]

Logged In: YES
user_id=1069984

Subject: Data missing from search results
Date: Fri, 22 Sep 2006 09:12:14 +0100
From: Antony Quinn
To: Johan Lennartsson

Johan,

What happens when you try to upload your data?

If you see something like "Problem in creating the Request
... Malformed stream" then please try uploading using the
following link and let me know if it works:
http://www.ebi.ac.uk/transfog-srv/portal/protected/admin.html

Thanks,

Antony

[Antony Quinn]

Logged In: YES
user_id=1069984

From: Antony Quinn
Sent: den 22 september 2006 14:17
To: Johan.Lennartsson
Subject: Re: Data missing from search results

Johan,

Sorry, I missed out some words in my email!

The "Feature" column is empty. Gene ID, Method and Feature
are mandatory columns, so please ensure these columns are
not empty. If your spreadsheet is for candidate gene
ranking, you should select "rank (TR:001)" from the
drop-down list in the Feature column. For example:

Gene/Protein ID Method Feature
ENSG00000139318 cDNA microarray (ECO:0000097) rank (TR:001)

If your spreadsheet is for functional annotation you should
add a Gene Ontology term in the Feature column, for example:

Gene/Protein ID Method Feature
ENSG00000139318 cDNA microarray (ECO:0000097) Apoptosis
(GO:0006915)

Please see the Help sheet in the spreadsheet for further
information.

When you have updated the spreadsheet, click the Export
button and upload your GFF file.

Thanks,

Antony

Johan Lennartsson wrote:
> > I am not sure what you mean. I attached the excel file
with this mail!
> >
> > Thanks,
> >
> > Johan
> >
> > -----Original Message-----
> > From: Antony Quinn
> > Sent: den 22 september 2006 12:55
> > To: Johan.Lennartsson
> > Subject: Re: Data missing from search results
> >
> >
> > Johan,
> >
> > Your GFF file has been updated but there is no data in
it. Did you
> > rows
> > to the Excel spreadsheet before clicking the Export
button? If yes,
> > please send me your spreadsheet and I will check it.
> >
> > Thanks,
> >
> > Antony
> >
> > Johan Lennartsson wrote:
>> >> Antony,
>> >>
>> >> yes I saw ".. Malformed stream..." Could it be because
I use firefox?
>> >> I tried the link you send me and know it might have
worked. When I
>> >> pushed upload I could not see anything happening, but
I did not get
>> >> the error message. I will login later to see if the
data is there!
>> >>
>> >> Thanks,
>> >>
>> >> Johan

[Antony Quinn]

[Antony Quinn]

Logged In: YES
user_id=1069984

Subject: RE: Data missing from search results
Date: Fri, 22 Sep 2006 13:02:47 +0200
From: Johan Lennartsson
To: 'Antony Quinn'

I am not sure what you mean. I attached the excel file with
this mail!

Thanks,

Johan

-----Original Message-----
From: Antony Quinn
Sent: den 22 september 2006 12:55
To: Johan.Lennartsson
Subject: Re: Data missing from search results

Johan,

Your GFF file has been updated but there is no data in it.
Did you add rows to the Excel spreadsheet before clicking
the Export button? If yes, please send me your spreadsheet
and I will check it.

Thanks,

Antony

Johan Lennartsson wrote:
> Antony,
>
> yes I saw ".. Malformed stream..." Could it be because I
use firefox?
> I tried the link you send me and know it might have
worked. When I
> pushed upload I could not see anything happening, but I
did not get
> the error message. I will login later to see if the data
is there!
>
> Thanks,
>
> Johan