[transfog-wp7-discuss] TRANSFOG WP7: Bioinformatics Workshop 7-8 July 2005 - Agenda and information

[Antony Q. <aq...@eb...>]

Hello,

I am pleased to confirm that the TRANSFOG Bioinformatics Workshop will=20
take place on 7-8 July 2005 at the EBI. Information about the EBI and a=20
preliminary agenda can be found below.

Please contact me if you have any questions.

Thank you,

Antony


Purpose
-------

By the end of the workshop each partner should be able to:
1. Map gene/transcript/protein identifiers to Ensembl/IPI identifiers
2. Create and edit GFF files using appopriate ontologies
3. View annotation for genes and proteins

Technical staff should also be able to:
4. Install and maintain DAS annotation servers


Agenda
------

Thursday 7 July

10.00 Welcome and introductions
10.15 Overview of DAS, GFF and relevant ontologies
10.45 Demonstration of DAS system
11.00 Coffee
11.30 Mapping gene and protein identifiers to Ensembl and IPI
13.00 Lunch
14.00 Mapping gene and protein identifiers to Ensembl and IPI (cont.)
15.30 Coffee
16.00 Open discussion
17.30 Scheduled end
19.30 Dinner [http://redlionhinxton.co.uk/]

Friday 8 July

09.00 Practical session: creating and editing GFF files
10.30 Coffee
11.00 Practical session: using DAS
12.30 Lunch
13.30 Optional practical session: installation of DAS annotation servers
14.00 Practical session: how to request features and report bugs
15.00 Coffee
15.30 Open discussion
16.30 Conclusions
17.00 Scheduled end

The optional practical is for technical staff who want to run their own=20
annotation server.


Accommodation
-------------

Accommodation is available on the campus at =A380 (120 euro) per night=20
including breakfast. Please contact the Wellcome Trust Conference Centre=20
by email at rec...@wt... or by telephone on +44 1223=20
495000. Further information is available at=20
http://hydra.hinxton.wellcome.ac.uk/booking/rates.html.

Transport
---------

The EBI is 20 minutes by taxi from Stansted Airport. Further information=20
is available at http://www.ebi.ac.uk/Information/Site_Info/



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Antony Quinn
Software Engineer
Proteomics Services Team
EMBL-European Bioinformatics Institute
Wellcome Trust Genome Campus
Cambridge CB10 1SD
United Kingdom
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aq...@eb...
+44 (0)1223 49 2574 (direct)
+44 (0)1223 49 4444 (switchboard)
http://www.ebi.ac.uk/
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