[Transdecoder-users] output files

[Jon L. <jon...@gm...>]

Hi

Ive run transdecoder a couple of times now,

However it only generates the temporary folder

with the three files:
longest_orfs.pep   : all ORFs meeting the minimum length criteria,
regardless of coding potential.
longest_orfs.gff3  : positions of all ORFs as found in the target
transcripts
longest_orfs.cds   : the nucleotide coding sequence for all detected ORFs

no other files are generated, e.g.:

"""longest_orfs.cds.top_500_longest"""


or the final outputs files in the current working directory


e.g. """transcripts.fasta.transdecoder.pep"""


Is the documentation (http://transdecoder.sourceforge.net/) out of date, or
is the transdecoder failing silently, I couldnt see any issues with memory
usage etc.

Thanks


Jon