[Transdecoder-users] transdecoder output

[Jon L. <jon...@gm...>]

Dear Transdecoder Team

I have started using transdecoder, and have an output peptide files.

I was interested in understanding the header output

for example what does type:3prime_partial compared to type:complete

>CG43321-RA.A|m.2 CG43321-RA.A|g.2 type:3prime_partial len:122 gc:universal CG43321-RA.A:363-1(-)
MHKFAPNSFGSPCRSSICAMVVILIIFRDIGRIKIKYFEELGQFLAHKSAQYNAGYNCDENSDVLVFIVLLSNFIYFFKVLEVVSTKWHFCVFISVTDFSVCSEMEYDIILIEISRLSPAK
>CG43321.a|m.3 CG43321.a|g.3 type:3prime_partial len:103 gc:universal CG43321.a:306-1(-)
MVVILIIFRDIGRIKIKYFEELGQFLAHKSAQYNAGYNCDENSDVLVFIVLLSNFIYFFKVLEVVSTKWHFCVFISVTDFSVCSEMEYDIILIEISRLSPAK
>RluA-1.d|m.4 RluA-1.d|g.4 type:complete len:294 gc:universal RluA-1.d:292-1173(+)
MEQQIRNRQVEKEYICRVEGVFPDGIVECKEPIEVVSYKIGVCKVSAKGKDCTTTFQKLSQNGTTSVVLCKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGPLKGRSGDIGGKSDEELIRDLINIHNAENWLGIDCDSDISMFKSTKDEADRESLSSEHT
SVVHHSDDDGCVNSRETTPPCNEPQQPENSVKLLETTNAVKEYQVAAQKSSSEICPAPLDAVESPLNGGGCNVGKVTVDEHCYECKVHYRDPKSKDLIMYLHAWKYKGPGWEYETELPNWARNDWDHLDSA*

Are there any other methods that are competitive with transdecoder in
terms of performance

Thanks

Dr Jon Lees