[Transdecoder-users] Returning multiple hits per contig

[Ciezarek, A. <a.c...@im...>]

Dear sir or madam,

I am using transdecoder to find the longest ORF within contigs, generated from RNA-seq data. I am only interested in analysing the longest ORF from each contig, but Transdecoder returns multiple for many contigs. Is there any way I can set it to just return one, or quickly remove all the shortest sequences?

Thanks,
Adam Ciezarek