[Transdecoder-users] Using BLASTN evidence for CDS predictions

[Martin M. <mmo...@gm...>]

Hi,
  I wonder whether TransDecoder could also run blastn against a somewhat related genome/transcriptome
and considered the matching regions. They will be matching exons and the UTRs won't be conserved.

  Further, could TransDecoder ignore a STOP codon and merge two ORFs if the macthes are in adjacent
frames on the same target strand?

At least ideas for the future,
Martin