[Transdecoder-users] ORFs without ATG as start

[Andre M. <And...@cr...>]

Hi,

First of all thanks for providing a tool to predict ORFs.

I am surprised to see, that so many of my ORFs predicted with
transdecoder do not start with ATG (5prime_partial, 650 out of 1807).

To me it seems like a malfunction of the software.

Is there an easy way to trim the ORFs to the nearest start codon?

Thanks
André

-- 
André Minoche, Postdoc

Centre for Genomic Regulation (CRG)
Doctor Aiguader, 88, 4th floor
08003 Barcelona
        
http://seq.crg.es