Re: [Transdecoder-users] Extract only best ORF

[<Ale...@cs...>]

Some Qs as it is not clear in my head:

  *   You mean a single ORF per Trinity sequence ?
  *   What is it affecting if you have two ORFs?
  *   What would be the metric that would score this (and makes biological sense)?
  *   How would you deal with Trinity sequences that have two real ORFs?

a

________________________________
From: Elasady, Summer [sr...@st...]
Sent: Tuesday, 15 April 2014 12:49 AM
To: tra...@li...
Subject: [Transdecoder-users] Extract only best ORF

Hello-

Is there a way to have transdecoder output only a single “best” ORF?

Thank you,

Summer R. Elasady
Baumann Lab - Bioinformatics Intern
SR...@st...