Re: [Transdecoder-users] Transdecoder error - cannot allocate memory

[<Ale...@cs...>]

Hello

Sorry to hear about that, sounds like a sysadmin issue. What does your HPC system administrator say?

Can /they/ run ffindex_apply_mpi using any command (see READ)?


From: Simen Rød Sandve [mailto:sim...@nm...]
Sent: Wednesday, February 19, 2014 19:50 PM
To: tra...@li...
Subject: [Transdecoder-users] Transdecoder error - cannot allocate memory

Hello,

I am trying to run transcoder with MPI on our cluster. However, the script seems to fail about 50% of the cases. The error message I get is «ERROR in fork() 10: Cannot allocate memory» (see  attaches slurm-file for entire error message output).

Im running the script on a small subset of sequences (100) and we have plenty full of computer resources (200 nodes and 2 TB memory), hence memory shouldn't be a problem.

I would be very grateful if you had some ideas of what could be the cause of the failed transcoder runs.

Best
Simen

________________________________
Simen R. Sandve, PhD
Researcher
IHA/NMBU
+47 64965554
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