[Transdecoder-users] Pfam AB version

[Kate B. <sk...@gm...>]

Hi,

I am just wondering how old the provided Pfam AB database is? Using
Transdecoder +/- PFAM search with the provided AB dataset, I get very few
additional hits being included. If you don't think that getting the VERY
newest version should affect results greatly, I won't worry about it. My
organism is very non-model... P. falciparum malaria, so maybe PFAM
searching just isn't so great for my organism?

Also, am I correct that the minimum length cutoff is in effect no matter
what? I.e something with a PFAM score above noise but shorter than length
cutoff won't make the final list.

Thanks! And happiest holidays :) Kate