Recent changes to Home

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Mon, 11 Mar 2013 10:11:42 -0000

--- v27
+++ v28
@@ -10,10 +10,9 @@
 2. **MetaStable**: [Metastability analysis of molecular conformations by clustering techniques](https://sourceforge.net/p/trajlab/metastable).
 Comes with its own [Wiki](https://sourceforge.net/p/trajlab/metastable/wiki), [SVN](https://sourceforge.net/p/trajlab/metastable/code) and [Tickets](https://sourceforge.net/p/trajlab/metastable/tickets)

-Probably TrajLab is the first attempt for a general purpose molecular simulation package written in [MATLAB](http://www.mathworks.com/products/matlab). While the authors are  aware that many other highly specialized and highly optimized program packages for the same or similar purposes exist (e. g. [AMBER](http://ambermd.org), [GROMACS](http://www.gromacs.org), [NAMD](http://www.ks.uiuc.edu/Research/namd), etc.), the [MATLAB](http://www.mathworks.com/products/matlab) environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in teaching!
+Probably TrajLab is the first attempt for a general purpose molecular simulation package written in [MATLAB](http://www.mathworks.com/products/matlab). While the authors are  aware that many other highly specialized and highly optimized program packages for the same or similar purposes exist (e. g. [AMBER](http://ambermd.org), [GROMACS](http://www.gromacs.org), [NAMD](http://www.ks.uiuc.edu/Research/namd), etc.), the [MATLAB](http://www.mathworks.com/products/matlab) environment offers easy access to manipulating the codes, testing novel algorithms, working with non-standard force fields and performing all kinds of numerical experiments. To be used mainly in teaching!

 Started early 2010, the TrajLab project is still in a rather early stage. Any help in further development is highly appreciated.

 [[project_admins]]
-Eva Pluharova
-Guillermo Perez-Hernandez
+

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 26 Feb 2013 10:09:43 -0000

--- v26
+++ v27
@@ -12,7 +12,7 @@

 Probably TrajLab is the first attempt for a general purpose molecular simulation package written in [MATLAB](http://www.mathworks.com/products/matlab). While the authors are  aware that many other highly specialized and highly optimized program packages for the same or similar purposes exist (e. g. [AMBER](http://ambermd.org), [GROMACS](http://www.gromacs.org), [NAMD](http://www.ks.uiuc.edu/Research/namd), etc.), the [MATLAB](http://www.mathworks.com/products/matlab) environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in teaching!

-Started early 2010, TrajLab is still in an early (alpha) stage, and any help in further development is highly appreciated.
+Started early 2010, the TrajLab project is still in a rather early stage. Any help in further development is highly appreciated.

 [[project_admins]]
 Eva Pluharova

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Thu, 10 Jan 2013 08:42:00 -0000

--- v25
+++ v26
@@ -17,5 +17,3 @@
 [[project_admins]]
 Eva Pluharova
 Guillermo Perez-Hernandez
-
-Note that this trajectory-related project has a wavepacket-based sibling named [WavePacket](http://sourceforge.net/projects/wavepacket) by the same project leader (BS), also available at SourceForge, which mainly deals with dynamics of (closed and open) quantum systems.

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 11 Dec 2012 12:14:53 -0000

--- v24
+++ v25
@@ -1,7 +1,7 @@
 Welcome to the TRAJectory LABoratory!
 -------------------------------------
 
-TrajLab (which stands for **TRAJectory LABoratory**) consists of two sets of MATLAB program packages. While **subproject MolDynSim** deals with generation of molecular trajectories (and other aspects of molecular simulation), **subproject MetaStable** is dedicated to the analysis of molecular trajectories by detecting metastable conformations (as well as other analysis techniques). Note that each of the two sub-projects has its own SVN repository, wiki, tracker, etc:
+TrajLab (which stands for **TRAJectory LABoratory**) consists of two sets of MATLAB program packages. While **subproject MolDynSim** deals with generation of molecular trajectories (and other aspects of molecular simulation), **subproject MetaStable** is dedicated to the analysis of molecular trajectories by detecting metastable conformations, as well as other analysis techniques.
 
 1. **MolDynSim**: [Classical molecular dynamics simulations based on arbitrary force fields](https://sourceforge.net/p/trajlab/moldynsim).
 Comes with its own [Wiki](https://sourceforge.net/p/trajlab/moldynsim/wiki), [SVN](https://sourceforge.net/p/trajlab/moldynsim/code) and [Tickets](https://sourceforge.net/p/trajlab/moldynsim/tickets)

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Fri, 07 Dec 2012 07:54:55 -0000

--- v23
+++ v24
@@ -15,6 +15,7 @@
 Started early 2010, TrajLab is still in an early (alpha) stage, and any help in further development is highly appreciated.
 
 [[project_admins]]
+Eva Pluharova
 Guillermo Perez-Hernandez
 
 Note that this trajectory-related project has a wavepacket-based sibling named [WavePacket](http://sourceforge.net/projects/wavepacket) by the same project leader (BS), also available at SourceForge, which mainly deals with dynamics of (closed and open) quantum systems.

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Mon, 03 Dec 2012 16:39:44 -0000

--- v22
+++ v23
@@ -3,9 +3,12 @@
 
 TrajLab (which stands for **TRAJectory LABoratory**) consists of two sets of MATLAB program packages. While **subproject MolDynSim** deals with generation of molecular trajectories (and other aspects of molecular simulation), **subproject MetaStable** is dedicated to the analysis of molecular trajectories by detecting metastable conformations (as well as other analysis techniques). Note that each of the two sub-projects has its own SVN repository, wiki, tracker, etc:
 
-1. **MolDynSim**: [Classical molecular dynamics simulations based on arbitrary force fields](https://sourceforge.net/p/trajlab/moldynsim)
+1. **MolDynSim**: [Classical molecular dynamics simulations based on arbitrary force fields](https://sourceforge.net/p/trajlab/moldynsim).
+Comes with its own [Wiki](https://sourceforge.net/p/trajlab/moldynsim/wiki), [SVN](https://sourceforge.net/p/trajlab/moldynsim/code) and [Tickets](https://sourceforge.net/p/trajlab/moldynsim/tickets)
 
-2. **MetaStable**: [Metastability analysis of molecular conformations by clustering techniques](https://sourceforge.net/p/trajlab/metastable)
+
+2. **MetaStable**: [Metastability analysis of molecular conformations by clustering techniques](https://sourceforge.net/p/trajlab/metastable).
+Comes with its own [Wiki](https://sourceforge.net/p/trajlab/metastable/wiki), [SVN](https://sourceforge.net/p/trajlab/metastable/code) and [Tickets](https://sourceforge.net/p/trajlab/metastable/tickets)
 
 Probably TrajLab is the first attempt for a general purpose molecular simulation package written in [MATLAB](http://www.mathworks.com/products/matlab). While the authors are  aware that many other highly specialized and highly optimized program packages for the same or similar purposes exist (e. g. [AMBER](http://ambermd.org), [GROMACS](http://www.gromacs.org), [NAMD](http://www.ks.uiuc.edu/Research/namd), etc.), the [MATLAB](http://www.mathworks.com/products/matlab) environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in teaching!

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Tue, 20 Nov 2012 07:32:38 -0000

--- v21
+++ v22
@@ -7,7 +7,7 @@
 
 2. **MetaStable**: [Metastability analysis of molecular conformations by clustering techniques](https://sourceforge.net/p/trajlab/metastable)
 
-Probably TrajLab is the first attempt for a general purpose molecular simulation package written in [MATLAB](http://www.mathworks.com/products/matlab). While the authors are  aware that many other highly specialized and highly optimized program packages for the same or similar purposes exist (e. g. [AMBER](http://ambermd.org), [GROMACS](http://www.gromacs.org), [NAMD](http://www.ks.uiuc.edu/Research/namd), etc.), the [MATLAB](http://www.mathworks.com/products/matlab) environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in research and teaching!
+Probably TrajLab is the first attempt for a general purpose molecular simulation package written in [MATLAB](http://www.mathworks.com/products/matlab). While the authors are  aware that many other highly specialized and highly optimized program packages for the same or similar purposes exist (e. g. [AMBER](http://ambermd.org), [GROMACS](http://www.gromacs.org), [NAMD](http://www.ks.uiuc.edu/Research/namd), etc.), the [MATLAB](http://www.mathworks.com/products/matlab) environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in teaching!
 
 Started early 2010, TrajLab is still in an early (alpha) stage, and any help in further development is highly appreciated.

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Mon, 19 Nov 2012 10:23:20 -0000

--- v20
+++ v21
@@ -14,4 +14,4 @@
 [[project_admins]]
 Guillermo Perez-Hernandez
 
-Note that this trajectory-related project has a wavepacket-based twin project named [WavePacket](http://sourceforge.net/projects/wavepacket) by the same project leader (BS), also available at SourceForge, which mainly deals with dynamics of (closed and open) quantum systems.
+Note that this trajectory-related project has a wavepacket-based sibling named [WavePacket](http://sourceforge.net/projects/wavepacket) by the same project leader (BS), also available at SourceForge, which mainly deals with dynamics of (closed and open) quantum systems.

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Mon, 19 Nov 2012 10:22:22 -0000

--- v19
+++ v20
@@ -1,4 +1,4 @@
-Welcome to the TRAJectory LABoratory
+Welcome to the TRAJectory LABoratory!
 -------------------------------------
 
 TrajLab (which stands for **TRAJectory LABoratory**) consists of two sets of MATLAB program packages. While **subproject MolDynSim** deals with generation of molecular trajectories (and other aspects of molecular simulation), **subproject MetaStable** is dedicated to the analysis of molecular trajectories by detecting metastable conformations (as well as other analysis techniques). Note that each of the two sub-projects has its own SVN repository, wiki, tracker, etc:

WikiPage Home modified by Burkhard Schmidt

Burkhard Schmidt — Mon, 19 Nov 2012 09:57:21 -0000

--- v18
+++ v19
@@ -1,7 +1,7 @@
 Welcome to the TRAJectory LABoratory
 -------------------------------------
 
-TrajLab (which stands for **TRAJectory LABoratory**) is a set of MATLAB program packages. While **subproject MolDynSim** deals with generation of molecular trajectories (and other aspects of molecular simulation), **subproject MetaStable** is dedicated to the analysis of molecular trajectories by detecting metastable conformations (as well as other analysis techniques). Note that each of the two sub-projects has its own SVN repository, wiki, tracker, etc:
+TrajLab (which stands for **TRAJectory LABoratory**) consists of two sets of MATLAB program packages. While **subproject MolDynSim** deals with generation of molecular trajectories (and other aspects of molecular simulation), **subproject MetaStable** is dedicated to the analysis of molecular trajectories by detecting metastable conformations (as well as other analysis techniques). Note that each of the two sub-projects has its own SVN repository, wiki, tracker, etc:
 
 1. **MolDynSim**: [Classical molecular dynamics simulations based on arbitrary force fields](https://sourceforge.net/p/trajlab/moldynsim)